RetrogeneDB ID: | retro_lafr_262 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_108:62278..63214(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EI24 | ||
Ensembl ID: | ENSLAFG00000010888 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.92 % |
Parental protein coverage: | 87.61 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 6 |
Parental | VVDRWGGEEMADSVKTFLQDLARGIKDSIWGICTISKLDARIQQKREEQRRRR-ASSVLAQRRAQSIERK |
.VD..GGEEMA..VKTFLQ.LARGIKDSIWGI.TISKL.A.I..KREE..RRR.ASS.L.Q...QS.E.K | |
Retrocopy | LVDGLGGEEMAGGVKTFLQGLARGIKDSIWGIYTISKLGAPIL*KREEKHRRR<ASSDLTQKGPQSTEPK |
Parental | QE-SEPRIVSRIFQCCAWNGGVFWLSLLLFYRVFIPGLQSVTAQIIGDPSL--HGDVWSWLEFFLTSIFS |
Q..SEPRI..RIFQCCAWNGG.F.LSLLLF...FIP..QSVTAQIIG.......GDV.SWLEFFLTSIFS | |
Retrocopy | QD>SEPRIAGRIFQCCAWNGGIFCLSLLLFHQMFIPVIQSVTAQIIGELFFYHYGDV*SWLEFFLTSIFS |
Parental | ALWVL-PLFVLSKVVNAIWFQDIADLAFEVSGRKPHPFPSVSKIIADMLFNL-LLQALFLLQGMFVSLFP |
ALWVL.PL.VLSKVVN.IWFQ.I.D.AFEVSGRKPHPFP.V.K..ADMLFNL.L.QALFLLQG.F.SLF. | |
Retrocopy | ALWVL<PLLVLSKVVNVIWFQNIGDQAFEVSGRKPHPFPRVRKATADMLFNL<LPQALFLLQGKFGSLF- |
Parental | IHLVGQLVSLLHMSLLYSLYCFEYRWFNKGIEMHQRLSNIERNWPYYFGFGLPLAFLTAMQSSYIISGCL |
IH.V.QLV.LLHMSLLYSL.CFE...FNKGIEMH..LSNIERNWP.YFGFGLPLA.LTA.Q.SYIISGCL | |
Retrocopy | IHPVIQLVCLLHMSLLYSLHCFE*Y*FNKGIEMH*LLSNIERNWPSYFGFGLPLALLTATQFSYIISGCL |
Parental | FSILFPLFI-ISANEAKTPGKAY-LFQLRLFSLVVFLSN |
FSILFPLFI.IS.N.AK.PGK.Y..F.L.LFSLVV.L.. | |
Retrocopy | FSILFPLFI>ISTNGAKAPGKVY>IFKLSLFSLVVLLTD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |