RetrogeneDB ID: | retro_mmul_1653 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 3:182322946..182323822(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EI24 | ||
Ensembl ID: | ENSMMUG00000010009 | ||
Aliases: | None | ||
Description: | etoposide induced 2.4 mRNA [Source:RefSeq peptide;Acc:NP_001244437] |
Percent Identity: | 71.77 % |
Parental protein coverage: | 81.51 % |
Number of stop codons detected: | 9 |
Number of frameshifts detected | 2 |
Parental | IWGHFSLLCVADSLV-VKMADSVKTFLQDLARGIKDSIWGICTISKLDARIQQKREEQRRRRASSILAQR |
I.G.F.LLCV.DSL....M.DSVK.FLQDL.RGIK.SI.G..T.SKL.A.IQQK.EEQ..RRASS.LAQR | |
Retrocopy | ILGYFCLLCVVDSLGGEEMPDSVKAFLQDLGRGIKYSI*GTFTVSKLHA*IQQKGEEQH*RRASSVLAQR |
Parental | RAQSIERKQESEPRIVSRIFQCCAWNGGVFWFSLLLFYRVFIPVLQSVTARIIGDPSLHGDVWSWLEFFL |
RA..IE...ESEP.IVSR.F.CC.WNGGVFW.SLLLFY.VFI..L.SVT..IIGD.S.HGD..SWLEFFL | |
Retrocopy | RAKNIE*E*ESEPCIVSRTFWCCTWNGGVFWSSLLLFY*VFILLLWSVTP*IIGDLS*HGDARSWLEFFL |
Parental | TSVFSALWVLP-LFVLSKVVNAIWFQDIADLAFEVSGRKPHPFPSVSKIIADMLFNLLLQALFLIQGMFV |
.S.FSA..VLP.LFV.SKVVNAIWFQDIADLAFE...RKPHPFPSV.K.IAD.L.NL.LQALFL.QG.FV | |
Retrocopy | ISIFSAH*VLP<LFVPSKVVNAIWFQDIADLAFEKPVRKPHPFPSVCKVIADLLSNLSLQALFLNQGVFV |
Parental | SLFPIHLVGQLVSLLHMSLLYSLYCFEYRWFNKGIEMHQRLSNIERNWPYYFGFGLPLAFLTAMQSS-YI |
SLFPIHLV.QLVSLLHMSLLY.L.CF.Y.WFNKGI..HQ.LSN.ERNW.YYFGFGLPLAFL.AMQ.S.Y. | |
Retrocopy | SLFPIHLVVQLVSLLHMSLLYALWCFKYCWFNKGIGAHQQLSNVERNWSYYFGFGLPLAFLMAMQAS>YQ |
Parental | ISGCLFSILFPLFI |
.S......LF.... | |
Retrocopy | CSHIISGCLFSILV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 49 .19 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 62 .27 RPM |
SRP007412_cerebellum | 0 .00 RPM | 38 .94 RPM |
SRP007412_heart | 0 .00 RPM | 27 .50 RPM |
SRP007412_kidney | 0 .00 RPM | 43 .43 RPM |
SRP007412_liver | 0 .00 RPM | 76 .91 RPM |
SRP007412_testis | 0 .23 RPM | 42 .52 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3804 |
Pan troglodytes | retro_ptro_2581 |