RetrogeneDB ID: | retro_dnov_2345 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_6621:60612..61292(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EI24 | ||
Ensembl ID: | ENSDNOG00000002362 | ||
Aliases: | None | ||
Description: | etoposide induced 2.4 [Source:HGNC Symbol;Acc:13276] |
Percent Identity: | 86.7 % |
Parental protein coverage: | 64.04 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 5 |
Parental | IKDSIWGICTISKLDARIQQKR-EEQRRRRASSILAQRRAQSIERKQESEPR-IVNRIFQCCAWNGGVFW |
IKDSIWGICTISK..ARI.QKR.E...RRR.SS.LAQRRAQSI.RKQESEPR..VNRIFQCCA.NG.VFW | |
Retrocopy | IKDSIWGICTISKPNARIEQKR>EQR-RRRTSSVLAQRRAQSIARKQESEPR>TVNRIFQCCARNGEVFW |
Parental | FSLLLFYRVFIPVLQSVTAQIIGDPSLHGDVWSWLEFFLTSIFSALWVLPLFV-LSK-VVNAIWFQDIAD |
FSLL.FYRVFIPVLQSVTAQIIGDPS.HGDV.SWLEFFLTSIFSALWVLP.F..L.K.VVNAIWFQDIAD | |
Retrocopy | FSLLVFYRVFIPVLQSVTAQIIGDPSPHGDVLSWLEFFLTSIFSALWVLPVFA<LAK<VVNAIWFQDIAD |
Parental | LAFEVSGRKPHPFPSVSKIIADMLFNLLLQALFLIQGMFVSLFPIHLVGQLVSLLHMSLLYSLYCFEYRW |
LAFEVSGRKPHPFPSVSKIIADMLFNLLL..LFLI.GMFVSLFPIHL.GQLVSLLHMSLLYSLYCFEY.W | |
Retrocopy | LAFEVSGRKPHPFPSVSKIIADMLFNLLLKPLFLI*GMFVSLFPIHLIGQLVSLLHMSLLYSLYCFEYCW |
Parental | FNKGIEMHQRL-SNIERNWPYYF |
FNKGIEM.QRL..NIERNWPY.F | |
Retrocopy | FNKGIEMQQRL<ANIERNWPY*F |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .19 RPM | 23 .53 RPM |
SRP012922_cerebellum | 0 .55 RPM | 21 .31 RPM |
SRP012922_heart | 0 .00 RPM | 21 .11 RPM |
SRP012922_kidney | 0 .82 RPM | 27 .11 RPM |
SRP012922_liver | 0 .15 RPM | 49 .69 RPM |
SRP012922_lung | 0 .00 RPM | 31 .46 RPM |
SRP012922_quadricep_muscle | 0 .17 RPM | 35 .31 RPM |
SRP012922_spleen | 0 .00 RPM | 27 .36 RPM |