RetrogeneDB ID: | retro_cfam_1829 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 6:57072430..57073190(-) | ||
Located in intron of: | ENSCAFG00000020179 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EI24 | ||
Ensembl ID: | ENSCAFG00000010898 | ||
Aliases: | None | ||
Description: | etoposide induced 2.4 [Source:HGNC Symbol;Acc:13276] |
Percent Identity: | 71.04 % |
Parental protein coverage: | 75.29 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | SLLLFYRVFIPVLQSVTAQIIGDPSLHGDVWSWLEFFLTSIFSALWVLPLFVLSKVVNAIWFQDIADLAF |
SLLLFY.VFIP.L.SVTAQ.IGDPS.HGDVWS...FF..S.F.ALWVLP.FVLSK.VNAI..QDIADLAF | |
Retrocopy | SLLLFYQVFIPAL*SVTAQTIGDPSQHGDVWSSVKFFFISFFRALWVLPPFVLSKAVNAISSQDIADLAF |
Parental | EVSGRKPHPFPSVSKIIADMLFNLLLQALFLIQGMFV-SLFPIHLVGQLVSLLHMSLLYSLYCFEYRWFN |
EVSGRKPHPFPSVSKI.ADMLFNL.LQA.F.IQG..V.SLFPIH..GQLVSLLH.SLLYS..C.EY.WFN | |
Retrocopy | EVSGRKPHPFPSVSKITADMLFNLWLQAPFHIQGTSV<SLFPIHYIGQLVSLLHTSLLYSPHCSEY-WFN |
Parental | KGIEMHQRLSNIERNWPYYFGFGLPLAFLTAMQSSYIISGCLFSIL-FPLFIISANEAKTPGKAYLFQLR |
KG.E.HQRLS..E..WPYY...G..L..L.....S..I.......L.FPLF.IS.NEAKTP.K.YL..L. | |
Retrocopy | KGTEVHQRLSSTEKRWPYYI--GFGLPWLSSQPCSPHILSVEAPLL>FPLFSISVNEAKTPSKVYLS*LC |
Parental | LFSLVVFL-SNRLFHKTVYLQSALSSSTSAEKFPSPHPSPAKLKAAAGH |
LFSLVVFL.S..LF.K..YL.SALSSSTSAEKFPSPHPSPA.LKAA.G. | |
Retrocopy | LFSLVVFL>SKSLFQKMIYL*SALSSSTSAEKFPSPHPSPARLKAATGN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 55 .94 RPM |
SRP017611_brain | 0 .00 RPM | 45 .73 RPM |
SRP017611_kidney | 0 .00 RPM | 170 .18 RPM |
SRP017611_liver | 0 .00 RPM | 61 .13 RPM |