RetrogeneDB ID: | retro_lafr_397 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_143:111313..111933(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EI24 | ||
Ensembl ID: | ENSLAFG00000010888 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.03 % |
Parental protein coverage: | 58.87 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 5 |
Parental | DVWSWLEFFLTSIFSALWVLP-LFVLSKVVNAIWFQDIADLAFEVSGRKPHPFPSVSKIIADMLFNLLL- |
.V.SWLEFFLTSIFSALWVLP.LFVLSK.VN.IWFQ.IAD.AFE..GRKP.PFPSV.K.IADMLFNL.L. | |
Retrocopy | NV*SWLEFFLTSIFSALWVLP<LFVLSKGVNVIWFQNIADQAFELTGRKPLPFPSVRKAIADMLFNLCL< |
Parental | QALFLLQGMFVSLFPIHLVGQLVSLLHMSLLYSLYCFEYRWFNKGIEMHQRLSNIERNWPYYFGFGL-PL |
QALFLLQG.F.SLF.IH.VGQLV.LLHMSLLYSL.CFE...FNKGIEMH..LSN.ERNWP..F.FGL.PL | |
Retrocopy | QALFLLQGKFGSLF-IHPVGQLVCLLHMSLLYSLHCFE*Y*FNKGIEMH*LLSNTERNWPSHFEFGL>PL |
Parental | AFLTAMQSSYIISGCLFSILFPLFIISANEAKTPGKAY-LFQLRLFSLVVFLSNRLFHKTVY-LQSALSS |
.......SS...S....SILFPLFIIS.NEAK.PGK.Y..F.L.LFSLVV.LSNR.FHK..Y.LQSA... | |
Retrocopy | -LCSQQRSSHPLSVAASSILFPLFIISTNEAKVPGKVY>IFKLSLFSLVVLLSNRPFHKMIY<LQSAQTL |
Parental | STSA |
..S. | |
Retrocopy | QRSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |