RetrogeneDB ID: | retro_eeur_435 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_300992:468..1018(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EI24 | ||
Ensembl ID: | ENSEEUG00000003274 | ||
Aliases: | None | ||
Description: | etoposide induced 2.4 [Source:HGNC Symbol;Acc:13276] |
Percent Identity: | 98.91 % |
Parental protein coverage: | 51.55 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | SRGHSALFCVVGS-SGDEMADSVKTFLQDLARGIKDSIWGICTISKLDARIQQKREEQRRRRASSVLAQR |
SRGHSALFCVVGS..GDEMADSVKTFLQDLARGIKDSIWGICTISKLDARIQQKREEQRRRRASSVLAQR | |
Retrocopy | SRGHSALFCVVGS>GGDEMADSVKTFLQDLARGIKDSIWGICTISKLDARIQQKREEQRRRRASSVLAQR |
Parental | RAQSIERKQESEPRIVNRIFQCCAWNGGVFWFSLLLFYRVFIPVLQSVTAQIIGDPSLHGDVWSWLEFFL |
RAQSIERKQESEPRIVNRIFQCCAWNGGVFWFSLLLFYRVFIPVLQSVTAQIIGDPSLHGDVWSWLEFFL | |
Retrocopy | RAQSIERKQESEPRIVNRIFQCCAWNGGVFWFSLLLFYRVFIPVLQSVTAQIIGDPSLHGDVWSWLEFFL |
Parental | TSIFSALWVLPLFVLSKVVNAIWFQDIADLAFEVSGRKPHPFPS |
TSIFSALWVLPLFVLSKVVNAIWFQDIADLAFEVSGRKPHPFPS | |
Retrocopy | TSIFSALWVLPLFVLSKVVNAIWFQDIADLAFEVSGRKPHPFPS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 12 .09 RPM | 42 .06 RPM |
SRP017611_kidney | 8 .81 RPM | 30 .19 RPM |
SRP017611_liver | 10 .93 RPM | 48 .39 RPM |