RetrogeneDB ID: | retro_cpor_132 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_0:41362760..41363698(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EI24 | ||
Ensembl ID: | ENSCPOG00000007272 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.88 % |
Parental protein coverage: | 91.01 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 6 |
Parental | LGGEEMADSVKTFLQDLGRGIKDSIWGICTISKLDARIQQKREEQRRRRASSA-LAQRRTQSIERKQDSE |
L.G..MADS.KTFLQDL.RGI..SIWGICTISKLDA.I.QKREEQ..RR.SSA..A.R.TQ.IE.KQ.SE | |
Retrocopy | LVGAQMADSSKTFLQDLSRGINGSIWGICTISKLDAQI*QKREEQYQRRTSSA<WAHRKTQNIEQKQESE |
Parental | SRILSRIFQCCAWNGGVFWLSLFLFYRVFIPVLQSVTARIIGD-PSLHGDIWSWLEFFI-TSVFSALWVL |
S......F..CAWN..VF.LSL.LF.RVFIPVLQSVTA.IIGD.PSLHGD.W.WLEFF...S.FS.LWVL | |
Retrocopy | SCTVNPNF*GCAWNNRVF*LSLLLFERVFIPVLQSVTAQIIGD<PSLHGDTWLWLEFFL>SSSFSVLWVL |
Parental | PLFVLSKIVNAIWFQDIADLAFEVSGRKPQPFPSVSKIIADMLFNLLLQALFLIQGMFVSL-FP-IHLVG |
P.FVLSK.VNAIWFQD.ADLAFEV.GRKPQ.FPSVSKIIAD.LF.L.LQALF.IQGMF.SL.FP.IHLVG | |
Retrocopy | PQFVLSKAVNAIWFQDGADLAFEVLGRKPQLFPSVSKIIADTLFSL*LQALFHIQGMFESL<FP<IHLVG |
Parental | QLVSLLHMSLLYSLYCFEYRWFNKGIEMHQRLSNIERNWPYYFGFGLPLAFLTAMQSSYIISGCLFSILF |
QLVSLL.MSLLYSLYCF.Y.WFNKGIEMHQ.LSN.E.NWPY.FGFGLPL.FLTA...S.IISGCLF.IL. | |
Retrocopy | QLVSLLRMSLLYSLYCFGYCWFNKGIEMHQWLSNREGNWPYFFGFGLPLSFLTAV*LSCIISGCLFFILS |
Parental | PLFIISANEAKTPGKAYL-FQLRLFSLVVFLSNRLFHKTV |
PLFIISANEAKTPGK.YL.F.LR.FSLV.FLSNRLFHK.. | |
Retrocopy | PLFIISANEAKTPGKVYL<FRLRPFSLVIFLSNRLFHKSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 41 .41 RPM |
SRP017611_kidney | 0 .00 RPM | 46 .38 RPM |
SRP017611_liver | 0 .00 RPM | 47 .57 RPM |
SRP040447_lung | 0 .00 RPM | 37 .28 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 43 .34 RPM |