RetrogeneDB ID: | retro_chof_1994 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_447553:294..869(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EI24 | ||
Ensembl ID: | ENSCHOG00000012669 | ||
Aliases: | None | ||
Description: | etoposide induced 2.4 [Source:HGNC Symbol;Acc:13276] |
Percent Identity: | 72.59 % |
Parental protein coverage: | 54.06 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 4 |
Parental | LLLFYRVFIPVLQSVTAQIIGDPSLHGDVWSWLEFFLTSIFSALWVLP-LFVLSKVVNAIWFQDIADLAF |
LLLFY.VFIPVL.SVTAQIIGD..LH..V.S.L.FFL.S.FSALWV.P.LFVLSKVV..IWF...A.L.F | |
Retrocopy | LLLFYQVFIPVLHSVTAQIIGDQ*LHEYVLS*L*FFLASVFSALWVFP<LFVLSKVVSTIWF*ATAHLTF |
Parental | EVSGRKPHPFPSVSKIIA-DMLFNLLLQALFLIQGMFVSLFPIHLIGQLVSLLHMSLLYSLY-CFEYRWF |
E.S.RK.H.FPSVSK.I...MLFN.LLQALFL.QG.FVSLFPIHL.GQLV.LLHM.LLYSLY..F.Y..F | |
Retrocopy | EGSYRKLHAFPSVSKVIV<GMLFNRLLQALFLNQGIFVSLFPIHLLGQLVNLLHMCLLYSLY<LFKYCSF |
Parental | NKGIEMHQRLSNIERNWPYYFGFG-LPLAFLTAMQSSYIISGCLFSIFFPLFIISAN |
.KG.EMH.R.S..ERN.PYYFGFG.LP.AFLTAMQSSYII...LFSI.FPLFI.S.N | |
Retrocopy | DKGLEMHWRMSDTERN*PYYFGFG<LPFAFLTAMQSSYIIISYLFSILFPLFIFSTN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |