RetrogeneDB ID: | retro_dnov_1083 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_14444:31674..32356(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EI24 | ||
Ensembl ID: | ENSDNOG00000002362 | ||
Aliases: | None | ||
Description: | etoposide induced 2.4 [Source:HGNC Symbol;Acc:13276] |
Percent Identity: | 74.03 % |
Parental protein coverage: | 64.33 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | IQQKREEQRRRRASSILAQRRAQSIERKQESEPRIVNRIFQCCAWNGGVFWFSLLLFYRVF-IPVLQSVT |
I...R.E..R....S.LAQ....SI..KQ.S.P.I..RIFQ.C..NG.VFWFSLLLF..V..IPVLQSVT | |
Retrocopy | IESSRREAQRQGRTSVLAQQSV*SIGQKQDSKPHI-SRIFQSCTCNGSVFWFSLLLFNQVL<IPVLQSVT |
Parental | AQIIGDPSLHGDVWSWLEFFLTSIFSALWVLPLFVLSKVVNAIWFQDIADLAFEVSGRKPHPFPSVSKII |
AQ.IGD.SLHGDVW.WLEFFL.S.FS.LW.L.LFVLSKVV.AIWFQDI.DLAFEVSGRK.HPFPSVSKII | |
Retrocopy | AQVIGDSSLHGDVWLWLEFFLMSLFSVLWFLTLFVLSKVVHAIWFQDITDLAFEVSGRKTHPFPSVSKII |
Parental | ADMLFNLLLQALFLIQGMFVSLFPIHLVGQLVSLLHMSLLYSLYCFEYRWFNKGIEMHQRLSNIERNWPY |
AD.L.NLLLQAL.LIQGMFVSLF..HLVGQLVSLLH.SLLYSLYCFEY.WF...IE..Q..SNIERNWPY | |
Retrocopy | ADLLVNLLLQALYLIQGMFVSLFSSHLVGQLVSLLHISLLYSLYCFEYHWFKIRIEIYQEQSNIERNWPY |
Parental | YFGFGLP-LAFLTAMQSSYII |
YFGFGL..LAF.TA.Q.SYII | |
Retrocopy | YFGFGLS<LAFFTAVQPSYII |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .19 RPM | 23 .53 RPM |
SRP012922_cerebellum | 0 .27 RPM | 21 .31 RPM |
SRP012922_heart | 0 .00 RPM | 21 .11 RPM |
SRP012922_kidney | 0 .00 RPM | 27 .11 RPM |
SRP012922_liver | 0 .15 RPM | 49 .69 RPM |
SRP012922_lung | 0 .31 RPM | 31 .46 RPM |
SRP012922_quadricep_muscle | 0 .17 RPM | 35 .31 RPM |
SRP012922_spleen | 0 .11 RPM | 27 .36 RPM |