RetrogeneDB ID: | retro_ecab_1022 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 9:30136585..30137459(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EI24 | ||
Ensembl ID: | ENSECAG00000015861 | ||
Aliases: | None | ||
Description: | etoposide induced 2.4 [Source:HGNC Symbol;Acc:13276] |
Percent Identity: | 68.12 % |
Parental protein coverage: | 96.38 % |
Number of stop codons detected: | 7 |
Number of frameshifts detected | 5 |
Parental | CVVGSWGGEEMADSVKTFLQDLARGIKDSIWGICTISKLDARIQQKREEQRRRRASSVLAQRRAQSIERK |
CVV...GGEEMAD.VKT.LQDLA.G.KDSIWGICTISKLDA.IQ.K.E.Q..RR.SS.LA..R....E.K | |
Retrocopy | CVVDILGGEEMADNVKTYLQDLAMGMKDSIWGICTISKLDA*IQEKGEKQH*RRTSSALARWREWDMEKK |
Parental | QESEPRIVSRIFQCCAWNGGVFWFSLLLFYRVFIPVLQSVTAQIIGDPSLHGDVWSWLEFFL-TSIFSAL |
.E.EP...S..FQC.A.NG..F...L.LF..VFI.VLQ.V.AQ..GDPSLHGDVW.WLEFFL.....SA. | |
Retrocopy | RENEPQVISGSFQCYA*NGRAF*LGLFLFH*VFITVLQPVIAQVTGDPSLHGDVWLWLEFFL<SITSSAH |
Parental | WVLPLF-VLSKVVNAIWFQDIADLAFEVSGRKPHPFPSVS-KIIADMLFNLLLQALFLIQGMFVSLFPIH |
WVLP...V.SKVVNA..FQD.ADLAFE.S.RKPHPFPSVS...I..MLFN..LQALF..QGMF.S..PIH | |
Retrocopy | WVLPSL<VFSKVVNAFCFQDGADLAFEASRRKPHPFPSVS<RTIVYMLFNGWLQALFFPQGMFLSFLPIH |
Parental | LVGQLVSLLHMSL-LYSLYCFEYRWFNKGIEMH-QRLSNIERNWPYYFGFGLPLAFLTAMQSSYIISGCL |
LVGQLVSLLH.SL.LYSLYCF.Y..FNK.IE.H.QRLSN.E.N.PYY.GFGLPL.FLT..QSSYI.SGCL | |
Retrocopy | LVGQLVSLLHISL<LYSLYCFKYH*FNKEIETH<QRLSNKEKN*PYYLGFGLPLTFLTTVQSSYISSGCL |
Parental | FSILFPLFIISANEAKTP |
FS.LFPLFI.S....K.P | |
Retrocopy | FSTLFPLFIVSLMNGKEP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 12 .22 RPM |
SRP021940_cerebellum | 0 .00 RPM | 33 .03 RPM |
SRP021940_embryo | 0 .00 RPM | 20 .05 RPM |
SRP021940_placental_villous | 0 .00 RPM | 25 .55 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 19 .27 RPM |
SRP021940_testis | 0 .00 RPM | 10 .87 RPM |