RetrogeneDB ID: | retro_rnor_2605 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 8:3918998..3919870(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ei24 | ||
Ensembl ID: | ENSRNOG00000030391 | ||
Aliases: | None | ||
Description: | Etoposide-induced protein 2.4 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q4KM77] |
Percent Identity: | 92.12 % |
Parental protein coverage: | 85.59 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MADSVKTFLQDLGRGIKDSIWGICTISKLDARIQQKREEQRRRRASSLLAQRRAQSVERKQESEPRIVSR |
M.DSVKTFLQDLGRGIKDSIWGICTISKLDA.IQQKREEQRRRR.SSLL.QRRAQSVERK.ESEP.IVSR | |
Retrocopy | MTDSVKTFLQDLGRGIKDSIWGICTISKLDAWIQQKREEQRRRRVSSLLPQRRAQSVERKRESEPHIVSR |
Parental | IFQCCAWNGGVFWFSLLLFYRVFIPVLQSVTARVIGDPSLHGDVWSWLEFFLTSIFSALWVLPLFVLSKV |
IFQCCAWNGG.FWFSLLLF.RVFIPVLQSVTAR.IGDPSLHGDVW.WLEFFLTSI.SALWVLPLFVLSKV | |
Retrocopy | IFQCCAWNGGAFWFSLLLFCRVFIPVLQSVTARIIGDPSLHGDVWTWLEFFLTSICSALWVLPLFVLSKV |
Parental | VNAIWFQDIADLAFEVSGRKPHPFPSVSKIIADMLFNLLLQALFLIQGMF-VSLFPIHLVGQLVSLLHMS |
VNAIWFQD.ADLAF.VSGRKPHP.PS.SKIIADMLFNLLLQALFLIQ....VSLFPIHLVGQLVSLLHMS | |
Retrocopy | VNAIWFQDTADLAFDVSGRKPHPSPSISKIIADMLFNLLLQALFLIQRKL<VSLFPIHLVGQLVSLLHMS |
Parental | LLYSLYCFEYRWFNKGIEMHQRLSNIERNWPYYFGFGLPLAFLTAMQSSYIISGCLFSILFPLFIISANE |
LL.SLYCFEY.WF.KGIEMHQRLSNIERNWPYYFGFGLPLAFLTAMQSSYIISGCLFSILFPLFIIS.NE | |
Retrocopy | LLHSLYCFEYLWFSKGIEMHQRLSNIERNWPYYFGFGLPLAFLTAMQSSYIISGCLFSILFPLFIISVNE |
Parental | AKTPGKAYLFQL |
AKTPGKAYLFQL | |
Retrocopy | AKTPGKAYLFQL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 81 .89 RPM |
SRP017611_kidney | 0 .07 RPM | 85 .06 RPM |
SRP017611_liver | 0 .00 RPM | 160 .03 RPM |