RetrogeneDB ID: | retro_btau_1599 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 8:19901856..19902905(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJA1 | ||
Ensembl ID: | ENSBTAG00000016265 | ||
Aliases: | None | ||
Description: | DnaJ homolog subfamily A member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5E954] |
Percent Identity: | 83.38 % |
Parental protein coverage: | 88.16 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 5 |
Parental | MVKETT-YYDVLGVKPNATQEELK-KAYRKLALKYHPDKNPNEGEKFKQ-ISQAYEVLSDAKKRELYDKG |
MVKETT.YYDVLGVKPNATQEELK.KAYR.LALKYHPDKNPNEG.KFKQ.ISQAYEVLSDAKKRELYDKG | |
Retrocopy | MVKETT>YYDVLGVKPNATQEELK<KAYRNLALKYHPDKNPNEG*KFKQ<ISQAYEVLSDAKKRELYDKG |
Parental | GEQAIKEGGAGGGFGSPMDIFDMFFGGGGRMQRERRGKNVVHQLTVTLED-LYNGAT-RKLALQKNVICD |
GEQAIK.GGA...FGSPMDIFD.FF............KN.V.QLTVTLED.LYNGAT.RKLALQKNVICD | |
Retrocopy | GEQAIKDGGAVISFGSPMDIFDTFFXXXXXXXXXXXXKNRVCQLTVTLED>LYNGAT<RKLALQKNVICD |
Parental | KCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVREK |
K.EGRGGKKGAVECCPN..GTGMQI.IHQ.GPGMV.QIQSVCM.CQGHGE.ISPKDRCKSCNGRKIV.EK | |
Retrocopy | KYEGRGGKKGAVECCPNYQGTGMQIIIHQTGPGMV*QIQSVCMGCQGHGEQISPKDRCKSCNGRKIV*EK |
Parental | KILEVHIDKGMKDGQKITFHGEGDQEPGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQK |
KI..VHI.K.MKDGQKITFHGE.DQEPGLE.GDIII.LDQKDHAVF..RGEDLFMCMDIQLVEALCGFQK | |
Retrocopy | KIIKVHIEKRMKDGQKITFHGERDQEPGLELGDIIIALDQKDHAVFPPRGEDLFMCMDIQLVEALCGFQK |
Parental | PISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKLSLLEKL |
PISTLD.RTIVITSHPGQIV..GDIKC.L.EGMPIY.RPYEKG.LIIEFKVNFPENGFLSPDKL...... | |
Retrocopy | PISTLDTRTIVITSHPGQIVQQGDIKCLLKEGMPIYHRPYEKGHLIIEFKVNFPENGFLSPDKLCWKNFC |
Parental | LPERK |
L..RK | |
Retrocopy | LRRRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 47 .87 RPM |
ERP005899_muscle | 0 .00 RPM | 74 .27 RPM |
SRP017611_brain | 0 .00 RPM | 72 .49 RPM |
SRP017611_kidney | 0 .00 RPM | 41 .61 RPM |
SRP017611_liver | 0 .00 RPM | 41 .83 RPM |
SRP030211_testis | 0 .01 RPM | 231 .66 RPM |