RetrogeneDB ID: | retro_tbel_2316 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_108882:70510..71146(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJA1 | ||
Ensembl ID: | ENSTBEG00000000596 | ||
Aliases: | None | ||
Description: | DnaJ (Hsp40) homolog, subfamily A, member 1 [Source:HGNC Symbol;Acc:5229] |
Percent Identity: | 95.79 % |
Parental protein coverage: | 53.9 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQ |
MVKE.TYYDVLGVKPNATQE.LKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQ | |
Retrocopy | MVKEMTYYDVLGVKPNATQEKLKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQ |
Parental | AIKEGGAGGGFGSPMDIFDMFFGGGGRMQRERRGKNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGR |
AIKEGGAGGGFGSPMDIF.MFFGGGGRMQRER.GKN.VHQLSVTLEDLYNGATRKLALQKNVICDKCEGR | |
Retrocopy | AIKEGGAGGGFGSPMDIFYMFFGGGGRMQRER-GKNIVHQLSVTLEDLYNGATRKLALQKNVICDKCEGR |
Parental | GGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKILEV |
GGKKGAVECCPNCRGTGMQIRIHQIGPG..QQ.QSVCMECQGHGERISPKDRCKSCNGRKIVREKKIL.V | |
Retrocopy | GGKKGAVECCPNCRGTGMQIRIHQIGPGRAQQVQSVCMECQGHGERISPKDRCKSCNGRKIVREKKIL-V |
Parental | HIDK |
HIDK | |
Retrocopy | HIDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |