RetrogeneDB ID: | retro_chof_1760 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_37755:4861..5478(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJA1 | ||
Ensembl ID: | ENSCHOG00000000631 | ||
Aliases: | None | ||
Description: | DnaJ (Hsp40) homolog, subfamily A, member 1 [Source:HGNC Symbol;Acc:5229] |
Percent Identity: | 79.23 % |
Parental protein coverage: | 51.89 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQ |
M.KETTYYDVLG.KPNA.QE.LKK.YRKL.LK.H.DKNPNEGEKFKQIS.AYEVLSD.KKRELYDKG.EQ | |
Retrocopy | MIKETTYYDVLGLKPNAIQEKLKKSYRKLSLKTHHDKNPNEGEKFKQISKAYEVLSDEKKRELYDKGREQ |
Parental | AIKEGGAGGGFGSPMDIFDMFFGGGG-RMQRERRGKNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEG |
AIK..G.GGGFGSPMDIF.MFFGGG....QRE.R.KN.VHQLS.TLEDLY..ATR.L.L.KNVI..KCEG | |
Retrocopy | AIKKDGEGGGFGSPMDIFGMFFGGGR<NVQREKREKNIVHQLSGTLEDLYKSATRELILTKNVIYNKCEG |
Parental | RGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVREKK |
.GGKKGAVECC.NC..T.MQIRIHQ.GPGMVQQ.Q.VCMECQGHGE.ISPKDRC.SC.GRKIV.E.K | |
Retrocopy | QGGKKGAVECCLNCQVTRMQIRIHQVGPGMVQQVQFVCMECQGHGEQISPKDRCNSCSGRKIVQERK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |