RetrogeneDB ID: | retro_chof_2020 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_457123:1..616(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJA1 | ||
Ensembl ID: | ENSCHOG00000000631 | ||
Aliases: | None | ||
Description: | DnaJ (Hsp40) homolog, subfamily A, member 1 [Source:HGNC Symbol;Acc:5229] |
Percent Identity: | 78.95 % |
Parental protein coverage: | 51.64 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | MVKETTYYDVLGVKPNATQEELKKAYRKLA-LKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGE |
MVKETT..DV.GVKPNATQE.LKKAYR.LA.LK.H.DKNPN.G.KFKQIS.AY.VL...KKRE.YDKGG. | |
Retrocopy | MVKETTCCDVWGVKPNATQEDLKKAYRRLA>LKKHSDKNPNQGKKFKQISEAYKVLPHEKKREVYDKGGK |
Parental | QAIKEGGAGGG-FGSPMDIFDMFF-GGGGRMQRERRGKNVVHQLSVTLEDLYNGATRKLALQKNVICDKC |
Q.IKEGGAGGG.F.SPMDIFDMFF.GGG.RMQRERRGKNVV.QLS..LE.LYNGATRKL.LQKN..CDKC | |
Retrocopy | QTIKEGGAGGG<FDSPMDIFDMFF>GGGRRMQRERRGKNVVYQLSLILENLYNGATRKLTLQKNTTCDKC |
Parental | EGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSC-NGRKIVREK |
EGRGGKK.AVEC.PNC...GMQIRIH..GPGMV.QIQSVCMECQGHGE..S.K.RCKSC..GRKIV.EK | |
Retrocopy | EGRGGKKEAVECYPNC*RAGMQIRIHPMGPGMVPQIQSVCMECQGHGEWVSFKGRCKSC<QGRKIVQEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |