RetrogeneDB ID: | retro_fcat_1492 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D2:70005836..70006078(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL34 | ||
Ensembl ID: | ENSFCAG00000015502 | ||
Aliases: | None | ||
Description: | ribosomal protein L34 [Source:HGNC Symbol;Acc:10340] |
Percent Identity: | 72.73 % |
Parental protein coverage: | 74.36 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | VYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVLMRLSKTKKHVSRAY-GGSMCAKCVRDRIKRAFLIEE |
........G....SACG.CPG...GVRAVRPKVLM...K.KKHVSRA..GGSMCAKCVRDRIKRAFLIEE | |
Retrocopy | LFTFPRRLGQH-QSACGACPGQ--GVRAVRPKVLM---K*KKHVSRAV<GGSMCAKCVRDRIKRAFLIEE |
Parental | QKIVVKVLKAQAQSQKAK |
QKIVVKVLKAQ.QS.KAK | |
Retrocopy | QKIVVKVLKAQSQSPKAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 56 .47 RPM |
SRP017611_kidney | 0 .00 RPM | 179 .11 RPM |
SRP017611_liver | 0 .00 RPM | 84 .61 RPM |