RetrogeneDB ID: | retro_mmus_215 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 14:26514553..26514910(+) | ||
Located in intron of: | ENSMUSG00000021870 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000078128 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl34 | ||
Ensembl ID: | ENSMUSG00000062006 | ||
Aliases: | Rpl34, 1100001I22Rik | ||
Description: | ribosomal protein L34 [Source:MGI Symbol;Acc:MGI:1915686] |
Percent Identity: | 82.2 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPK-VLMRLSK |
MVQRLTY..RLSYNTASNKTRLSRTP.NRIVYLYTKKVGKAPKSACGVCP.RL.G..AVR...VLMRLSK | |
Retrocopy | MVQRLTYCQRLSYNTASNKTRLSRTPDNRIVYLYTKKVGKAPKSACGVCPLRLQGLPAVRARVVLMRLSK |
Parental | TQKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLKAQAQSQKAK |
T...VSRAY..SMCAKCV.DRIK.AF.IEEQKI.V.VLK.QAQSQKAK | |
Retrocopy | TKMQVSRAYSCSMCAKCVCDRIKQAFFIEEQKIIVNVLKVQAQSQKAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 41 .14 RPM |
SRP007412_cerebellum | 0 .04 RPM | 24 .40 RPM |
SRP007412_heart | 0 .00 RPM | 40 .38 RPM |
SRP007412_kidney | 0 .02 RPM | 42 .08 RPM |
SRP007412_liver | 0 .00 RPM | 45 .41 RPM |
SRP007412_testis | 0 .00 RPM | 39 .75 RPM |