RetrogeneDB ID: | retro_fcat_953 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:40238362..40238709(+) | ||
Located in intron of: | ENSFCAG00000006860 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL34 | ||
Ensembl ID: | ENSFCAG00000015502 | ||
Aliases: | None | ||
Description: | ribosomal protein L34 [Source:HGNC Symbol;Acc:10340] |
Percent Identity: | 74.36 % |
Parental protein coverage: | 99.15 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGK-APKSACGVCPGRLRGVRAVRPKVLMRLSK |
MVQ.LT...RLSY..ASNKTRLS.TPGNRIVYLYTK...K.A.KSAC.V.PG.L.GV.A.RPKVLMRLSK | |
Retrocopy | MVQHLTCHHRLSYKAASNKTRLS*TPGNRIVYLYTKEIKK<ALKSACDVYPGQLQGVCAGRPKVLMRLSK |
Parental | TKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLKAQAQSQKA |
T.KHVS....GSM.AKCV.DRIK.AFL.EEQKI.VK.LK.QAQSQKA | |
Retrocopy | TRKHVSGVHDGSMRAKCVHDRIKCAFLTEEQKIIVKMLKPQAQSQKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 56 .47 RPM |
SRP017611_kidney | 0 .00 RPM | 179 .11 RPM |
SRP017611_liver | 0 .00 RPM | 84 .61 RPM |