RetrogeneDB ID: | retro_fcat_518 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:26325440..26325788(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL34 | ||
Ensembl ID: | ENSFCAG00000015502 | ||
Aliases: | None | ||
Description: | ribosomal protein L34 [Source:HGNC Symbol;Acc:10340] |
Percent Identity: | 76.72 % |
Parental protein coverage: | 99.15 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVLMRLSKT |
MV..LTY.R.LSY.TASNKTRLS.TPGNRIVYLYTKK.GKA..SACGVCPGRL.GV.A.RP.VL.RLSKT | |
Retrocopy | MV*CLTYHRWLSYDTASNKTRLS*TPGNRIVYLYTKKIGKASNSACGVCPGRL*GVHAMRPRVLLRLSKT |
Parental | KKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLKAQAQSQKA |
KKH..RAYGGS..AKCV.DR....FL..EQKIV.KVLKAQAQ.QKA | |
Retrocopy | KKHIIRAYGGSV*AKCVCDRTNCVFLVDEQKIVLKVLKAQAQRQKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 56 .47 RPM |
SRP017611_kidney | 0 .00 RPM | 179 .11 RPM |
SRP017611_liver | 0 .00 RPM | 84 .61 RPM |