RetrogeneDB ID: | retro_fcat_544 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:89599833..89600180(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL34 | ||
Ensembl ID: | ENSFCAG00000015502 | ||
Aliases: | None | ||
Description: | ribosomal protein L34 [Source:HGNC Symbol;Acc:10340] |
Percent Identity: | 66.67 % |
Parental protein coverage: | 99.15 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVLMRLSKT |
.VQ.LTY.R.L.YNT.SNKTR..RTP.NRIV....K.VGK..KSACGV.PGRL.GV....P.VLMRLSKT | |
Retrocopy | VVQCLTYHRGLFYNTTSNKTRVPRTPANRIVSFIPKRVGKHQKSACGVSPGRL*GVYGMKPTVLMRLSKT |
Parental | -KKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLKAQAQSQKA |
.K.H.SRA...S.CA.CV.DRIK.AFLI.EQ.I.VKV.KA..QSQKA | |
Retrocopy | <KSHISRAHSCSTCANCVGDRIKHAFLIKEQ*IIVKVWKA*EQSQKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 56 .47 RPM |
SRP017611_kidney | 0 .00 RPM | 179 .11 RPM |
SRP017611_liver | 0 .00 RPM | 84 .61 RPM |