RetrogeneDB ID: | retro_mmus_609 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 10:128190528..128190882(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl34 | ||
Ensembl ID: | ENSMUSG00000062006 | ||
Aliases: | Rpl34, 1100001I22Rik | ||
Description: | ribosomal protein L34 [Source:MGI Symbol;Acc:MGI:1915686] |
Percent Identity: | 84.03 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVLMRLSKT |
MVQRLT..RRLSYNTASNKTRLSRTPGNRIVYLYT.K.GKAPKSACGV.PGRL.GVRAVRPKVL.RLS.. | |
Retrocopy | MVQRLTNSRRLSYNTASNKTRLSRTPGNRIVYLYTMKGGKAPKSACGVSPGRLQGVRAVRPKVLLRLS-N |
Parental | QKHVS--RAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLKAQAQSQKAK |
Q...S..RAY.GSMCAKCV.D.IKRAFLIEEQKIVV.VLKAQAQSQ.AK | |
Retrocopy | QRSMS*RRAYDGSMCAKCVCDGIKRAFLIEEQKIVVEVLKAQAQSQRAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 41 .14 RPM |
SRP007412_cerebellum | 0 .00 RPM | 24 .40 RPM |
SRP007412_heart | 0 .03 RPM | 40 .38 RPM |
SRP007412_kidney | 0 .02 RPM | 42 .08 RPM |
SRP007412_liver | 0 .00 RPM | 45 .41 RPM |
SRP007412_testis | 0 .00 RPM | 39 .75 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_1587 | 523 libraries | 371 libraries | 174 libraries | 1 library | 3 libraries |