RetrogeneDB ID: | retro_eeur_517 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_333686:7996..8614(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSEEUG00000004994 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 92.72 % |
Parental protein coverage: | 78.03 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | KGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVA |
KG.KKGAKKKVVDPF.KKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIAS.GLKG.VFEVSLADLQNDEVA | |
Retrocopy | KGVKKGAKKKVVDPFLKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASGGLKGHVFEVSLADLQNDEVA |
Parental | FRKFKLITEDDQGKNCLTNFHGMDLTRDKMCSMVKKQWTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQI |
FRKFKLITED.QGKNCLTNFHGM.LT.DKMCSMVKK..TMIEAHVDVKTTDGYL.RLFCVGFTKK.NNQ. | |
Retrocopy | FRKFKLITEDVQGKNCLTNFHGMELTSDKMCSMVKKWQTMIEAHVDVKTTDGYLHRLFCVGFTKKCNNQM |
Parental | RKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVK |
RK.SYAQHQQV.QI.KKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVK | |
Retrocopy | RKNSYAQHQQV*QIQKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 4 .51 RPM | 171 .46 RPM |
SRP017611_kidney | 7 .31 RPM | 311 .88 RPM |
SRP017611_liver | 6 .75 RPM | 246 .47 RPM |