RetrogeneDB ID: | retro_dord_380 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_1492:110325..111107(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDORG00000002250 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 95.04 % |
Parental protein coverage: | 98.86 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | GKNKRLT-GGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLAD |
GKNK.LT.G.KKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLAD | |
Retrocopy | GKNKCLTKGSKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLAD |
Parental | LQNDEVAFRKFKLITEDVQGKNCLTNFH-GMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGF |
LQNDEVAFRKFKLITEDVQG.NCLTNF..GMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGF | |
Retrocopy | LQNDEVAFRKFKLITEDVQGRNCLTNFQ<GMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGF |
Parental | TKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFV |
TKKRN.QIRKTSYAQHQQV.QI.KKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFV | |
Retrocopy | TKKRNIQIRKTSYAQHQQVCQIQKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFV |
Parental | RKVKMLKKPKFELGKLMELHGEGGSSGKATGDETGAKVERADGYEPPVQESV |
RKVKMLKKPKF.LGKLMELH.EGGSSGKATGDE.GAKVER.DGYEPPVQESV | |
Retrocopy | RKVKMLKKPKFQLGKLMELHSEGGSSGKATGDEIGAKVERTDGYEPPVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |