Parental gene: | RPS2, ENSECAG00000009065 |
| Aliases: | None |
| Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
| Organism: | Horse (Equus caballus) |
| Coordinates: | 13:40828939..40830877(+) |
>ENSECAG00000009065
ATGGCGGATGACGCCGGTGCTGCGGGAGGGCCTGGAGGCCCCGGGGGCCCTGGACTGGGAAGCCGCGGAGGCTTCCGCGG
AGGCTTCGGCAGTGGCGTCCGGGGCCGGGGTCGCGGTCGTGGTCGGGGCCGGGGCCGAGGCCGCGGAGCTCGCGGAGGCA
AGGCCGAGGACAAGGAGTGGATCCCCGTCACCAAGCTGGGTCGCCTGGTGAAAGACATGAAGATCAAGTCCCTGGAGGAA
ATCTACCTCTTCTCCCTGCCCATTAAGGAGTCTGAGATCATTGACTTTTTCCTGGGGGCATCTCTCAAGGACGAGGTTTT
GAAGATTATGCCGGTGCAAAAACAGACCCGTGCTGGCCAGCGGACCAGGTTCAAGGCATTTGTTGCCATCGGGGATTACA
ATGGACATGTCGGTCTGGGTGTGAAGTGCTCCAAGGAGGTAGCTACTGCCATCCGTGGGGCCATCATCCTTGCCAAGCTC
TCCATTGTCCCCGTGCGACGAGGCTACTGGGGGAACAAGATTGGCAAGCCCCATACTGTTCCTTGCAAGGTGACAGGTCG
CTGTGGCTCTGTGCTGGTGCGCCTCATCCCTGCCCCCAGAGGCACTGGCATTGTGTCAGCCCCTGTGCCCAAGAAGCTCT
TGATGATGGCTGGTATTGACGACTGCTACACCTCGGCCAGGGGCTGTACTGCCACCCTTGGCAACTTTGCTAAGGCCACC
TTTGATGCCATCTCTAAGACCTACAGCTATCTCACCCCCGACCTCTGGAAAGAGACCGTGTTCACCAAGTCTCCCTATCA
GGAGTTCACTGACCATCTTGTAAAGAATCACACCAGAGTCTCCGTGCAGAGGACCCAGGCTCCAGCTGTGGCTACCACAT
AG
ATGGCGGATGACGCCGGTGCTGCGGGAGGGCCTGGAGGCCCCGGGGGCCCTGGACTGGGAAGCCGCGGAGGCTTCCGCGG
AGGCTTCGGCAGTGGCGTCCGGGGCCGGGGTCGCGGTCGTGGTCGGGGCCGGGGCCGAGGCCGCGGAGCTCGCGGAGGCA
AGGCCGAGGACAAGGAGTGGATCCCCGTCACCAAGCTGGGTCGCCTGGTGAAAGACATGAAGATCAAGTCCCTGGAGGAA
ATCTACCTCTTCTCCCTGCCCATTAAGGAGTCTGAGATCATTGACTTTTTCCTGGGGGCATCTCTCAAGGACGAGGTTTT
GAAGATTATGCCGGTGCAAAAACAGACCCGTGCTGGCCAGCGGACCAGGTTCAAGGCATTTGTTGCCATCGGGGATTACA
ATGGACATGTCGGTCTGGGTGTGAAGTGCTCCAAGGAGGTAGCTACTGCCATCCGTGGGGCCATCATCCTTGCCAAGCTC
TCCATTGTCCCCGTGCGACGAGGCTACTGGGGGAACAAGATTGGCAAGCCCCATACTGTTCCTTGCAAGGTGACAGGTCG
CTGTGGCTCTGTGCTGGTGCGCCTCATCCCTGCCCCCAGAGGCACTGGCATTGTGTCAGCCCCTGTGCCCAAGAAGCTCT
TGATGATGGCTGGTATTGACGACTGCTACACCTCGGCCAGGGGCTGTACTGCCACCCTTGGCAACTTTGCTAAGGCCACC
TTTGATGCCATCTCTAAGACCTACAGCTATCTCACCCCCGACCTCTGGAAAGAGACCGTGTTCACCAAGTCTCCCTATCA
GGAGTTCACTGACCATCTTGTAAAGAATCACACCAGAGTCTCCGTGCAGAGGACCCAGGCTCCAGCTGTGGCTACCACAT
AG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP021940_synovial_membrane | 1087 .71 RPM |
| SRP021940_embryo | 851 .49 RPM |
| SRP021940_cerebellum | 357 .55 RPM |
| SRP021940_testis | 354 .05 RPM |
| SRP021940_placental_villous | 688 .28 RPM |
| SRP021940_articular_cartilage | 1345 .23 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Anolis carolinensis | ENSACAG00000002549 | ortholog_one2one | 1 retrogene | |
| Canis familiaris | ENSCAFG00000019472 | ortholog_one2one | 19 retrogenes |
retro_cfam_1028, retro_cfam_1252, retro_cfam_1321, retro_cfam_1460, retro_cfam_1560, retro_cfam_1592, retro_cfam_1842, retro_cfam_1848, retro_cfam_1932, retro_cfam_1983, retro_cfam_2007, retro_cfam_2012, retro_cfam_2046, retro_cfam_2053, retro_cfam_2110, retro_cfam_271, retro_cfam_323, retro_cfam_490, retro_cfam_629,
|
| Cavia porcellus | ENSCPOG00000011651 | possible_ortholog | 11 retrogenes | |
| Monodelphis domestica | ENSMODG00000016077 | possible_ortholog | 1 retrogene | |
| Mus musculus | ENSMUSG00000044533 | possible_ortholog | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000016704 | ortholog_one2one | 8 retrogenes | |
| Rattus norvegicus | ENSRNOG00000014179 | possible_ortholog | 12 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000015213 | possible_ortholog | 5 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ecab_509 | 56.95 | 50.51 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ecab_632 | 93.22 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ecab_876 | 71.58 | 60.41 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ecab_892 | 58.57 | 70.99 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ecab_949 | 61.05 | 64.51 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_ecab_1025 | 72.25 | 70.65 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_ecab_1105 | 92.91 | 85.67 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSECAG00000009065 retrocopies