Parental gene:

RPS2, ENSPVAG00000016704

Aliases:None
Description:ribosomal protein S2 [Source:HGNC Symbol;Acc:10404]
Organism:Megabat (Pteropus vampyrus)
Coordinates:GeneScaffold_49:521779..523684(-)


>ENSPVAG00000016704
ATGGCGGATGACGCCGGTGCTGCGGGGGGGCCCGGAGGCCCCGGGGGCCCTGGGATTGGAGGCCGCGGCGGCTTCCGTGG
AGGATTCGGCAGCGGCATCCGGGGTCGAGGTCGTGGCCGGGGTCGCGGCCGGGGCCGAGGCCGCGGAGCTCGCGGAGGCA
AAGCTGAGGATAAGGAGTGGATTCCCGTCACTAAGTTGGGCCGCTTGGTCAAGGACATGAAGATCAAGTCTCTGGAGGAG
ATCTATCTCTTCTCTCTGCCAATCAAGGAATCTGAGATCATTGACTTTTTCTTGGGAGCATCTCTCAAAGACGAGGTTTT
GAAGATTATGCCCGTGCAAAAGCAGACCCGTGCTGGTCAGAGGACCCGGTTCAAGGCATTTGTTGCCATTGGGGACTACA
ATGGACATGTCGGTTTGGGTGTCAAGTGCTCCAAGGAGGTAGCCACTGCCATCCGTGGGGCTATCATCCTGGCCAAGCTC
TCCATTGTCCCTGTGCGGCGAGGCTACTGGGGGAACAAGATCGGCAAGCCCCACACCGTCCCTTGCAAGGTGACTGGCCG
CTGTGGCTCTGTACTGGTGCGCCTCATTCCTGCCCCCAGGGGCACTGGCATTGTCTCAGCCCCTGTGCCCAAGAAGCTGT
TGATGATGGCAGGTATTGATGACTGCTACACCTCAGCCAGGGGCTGCACTGCCACCCTGGGTAACTTTGCCAAGGCCACA
TTTGATGCCATCTCTAAGACCTACAGCTATCTCACCCCTGACCTCTGGAAAGAGACCGTGTTCACCAAGTCTCCCTATCA
GGAATTCACTGACCATCTTGTAAAGACCCACACTAGAGTTTCTGTGCAGAGGACCCAGGCTCCAGCAGTGGCTACCACAT
AA

Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000002549 ortholog_one2one 1 retrogene
retro_acar_57,
Canis familiaris ENSCAFG00000019472 ortholog_one2one 19 retrogenes
retro_cfam_1028, retro_cfam_1252, retro_cfam_1321, retro_cfam_1460, retro_cfam_1560, retro_cfam_1592, retro_cfam_1842, retro_cfam_1848, retro_cfam_1932, retro_cfam_1983, retro_cfam_2007, retro_cfam_2012, retro_cfam_2046, retro_cfam_2053, retro_cfam_2110, retro_cfam_271, retro_cfam_323, retro_cfam_490, retro_cfam_629,
Cavia porcellus ENSCPOG00000011651 possible_ortholog 11 retrogenes
retro_cpor_1030, retro_cpor_1238, retro_cpor_1376, retro_cpor_1469, retro_cpor_1527, retro_cpor_177, retro_cpor_19, retro_cpor_437, retro_cpor_718, retro_cpor_769, retro_cpor_808,
Equus caballus ENSECAG00000009065 ortholog_one2one 7 retrogenes
retro_ecab_1025, retro_ecab_1105, retro_ecab_509, retro_ecab_632, retro_ecab_876, retro_ecab_892, retro_ecab_949,
Monodelphis domestica ENSMODG00000016077 possible_ortholog 1 retrogene
retro_mdom_536,
Mus musculus ENSMUSG00000044533 possible_ortholog 1 retrogene
retro_mmus_148,
Rattus norvegicus ENSRNOG00000014179 possible_ortholog 12 retrogenes
retro_rnor_1882, retro_rnor_2191, retro_rnor_2257, retro_rnor_2274, retro_rnor_2903, retro_rnor_438, retro_rnor_631, retro_rnor_681, retro_rnor_690, retro_rnor_809, retro_rnor_810, retro_rnor_878,
Sarcophilus harrisii ENSSHAG00000015213 possible_ortholog 5 retrogenes
retro_shar_186, retro_shar_288, retro_shar_456, retro_shar_525, retro_shar_783,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pvam_34 63.40 64.16
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2. retro_pvam_221 65.83 93.52
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3. retro_pvam_240 74.69 54.27
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4. retro_pvam_459 74.58 98.29
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5. retro_pvam_521 83.16 100.00
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6. retro_pvam_595 70.33 61.09
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7. retro_pvam_1395 65.24 62.80
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8. retro_pvam_1486 84.53 61.77
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Download FASTA sequences of all ENSPVAG00000016704 retrocopies