RetrogeneDB ID: | retro_pvam_221 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | GeneScaffold_1976:311568..312377(-) | ||
Located in intron of: | ENSPVAG00000017426 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSPVAG00000016704 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 65.83 % |
Parental protein coverage: | 93.52 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | GGRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGGKAEDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIK |
G..GG..G..G.G..G.....G..R....G...G....K.WIPVTKLGRLVK.MKIKSLE.I.LFSL.IK | |
Retrocopy | GATGGSGGPRGPGMGGHCSFLGGFRNSV*GGGQGQGR-KRWIPVTKLGRLVKNMKIKSLE-I*LFSLTIK |
Parental | ESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAI-ILA |
ESEI.DFF...S.KDEVLKIM.VQKQT.AG..........I.DYNGH.GLGVKCSKEVATAI.....I.. | |
Retrocopy | ESEINDFFMHTSFKDEVLKIMLVQKQTHAGE-DPVQGICCIKDYNGHAGLGVKCSKEVATAIHMGL<IIP |
Parental | KLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSA-PVP-KKLLMMAGIDDCYTSA |
......VR.GY..NKIGKPHT.PCKVT..CGSV.V.....PRG.GIVSA.P.P.KKLLMMAGIDDCYTSA | |
Retrocopy | DKLSTSVRQGY*ENKIGKPHTIPCKVTSCCGSVFVCPTHIPRGIGIVSA<PCP<KKLLMMAGIDDCYTSA |
Parental | RGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRV-SVQRTQAPAVATT |
RGCTATLGNF.KAT.DAISKTYSY.TP..WKE..FTK..YQEFTDH..K.H..V.SVQRTQAPAVATT | |
Retrocopy | RGCTATLGNFTKATCDAISKTYSYFTPNHWKELSFTKCSYQEFTDHVAKLHREV<SVQRTQAPAVATT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000002549 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000019472 | 19 retrocopies |
retro_cfam_1028, retro_cfam_1252, retro_cfam_1321, retro_cfam_1460, retro_cfam_1560, retro_cfam_1592, retro_cfam_1842, retro_cfam_1848, retro_cfam_1932, retro_cfam_1983, retro_cfam_2007, retro_cfam_2012, retro_cfam_2046, retro_cfam_2053, retro_cfam_2110, retro_cfam_271, retro_cfam_323, retro_cfam_490, retro_cfam_629,
|
Cavia porcellus | ENSCPOG00000011651 | 11 retrocopies | |
Equus caballus | ENSECAG00000009065 | 7 retrocopies | |
Monodelphis domestica | ENSMODG00000016077 | 1 retrocopy | |
Mus musculus | ENSMUSG00000044533 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000016704 | 8 retrocopies |
retro_pvam_1395, retro_pvam_1486, retro_pvam_221 , retro_pvam_240, retro_pvam_34, retro_pvam_459, retro_pvam_521, retro_pvam_595,
|
Rattus norvegicus | ENSRNOG00000014179 | 12 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000015213 | 5 retrocopies |