RetrogeneDB ID: | retro_cfam_1842 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 7:20659068..20659599(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000019472 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.58 % |
Parental protein coverage: | 60.75 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | LFSLPIKESEIID-FFLGASL-KDEVLKIMPVQ-KQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVAT |
LFS.PI.E.EI.D.FFLGA.L.KDE.L.I........RA...TRF.AFVAIG.YN.H..LGVKCSK...T | |
Retrocopy | LFSQPIREFEITD<FFLGAFL>KDELLRIIVQK>RPVRAA**TRF*AFVAIGEYNLHISLGVKCSKKILT |
Parental | AIRGAIILAKLSIVPVRRGYWG-NKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAG |
AI....ILAK.SIVP..RGY.G.NKI.KP.TVP..VT..CGSVLV.LIP.PRG.GIV.AP.PKKL...AG | |
Retrocopy | AIHEVVILAKPSIVPMQRGYQG<NKISKPYTVPGEVTCHCGSVLVCLIPVPRGIGIVLAPMPKKL-PIAG |
Parental | IDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETV |
ID..YTSARGCTATLGNFA.A..D.ISKTYS.LTP.LWKETV | |
Retrocopy | IDNFYTSARGCTATLGNFANAALDTISKTYSCLTPHLWKETV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 405 .33 RPM |
SRP017611_brain | 0 .00 RPM | 141 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 1239 .39 RPM |
SRP017611_liver | 0 .00 RPM | 306 .08 RPM |