RetrogeneDB ID: | retro_cfam_271 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 1:86868379..86869020(+) | ||
Located in intron of: | ENSCAFG00000001849 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000019472 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.42 % |
Parental protein coverage: | 74.06 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | AEDKEWI-PVTKLGRLVKDMKIKS-LEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRT |
A..KEWI.PVTKLGRL.KDMKIKS.LEEIY.F.LP.KESEI.DFF.G.SLK..VLK.M.VQKQ.RAGQ.T | |
Retrocopy | AKGKEWI<PVTKLGRLAKDMKIKS<LEEIYFFFLPVKESEITDFFPGVSLK--VLKTMLVQKQPRAGQWT |
Parental | RFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSI-VPVRRGYWGNKIGKPHTVPCKVTGRCGSV |
RFKAF.AI....G..GLGVKCS.E.ATAIRGA.IL.KLS...P...GY..NKI.K.H.VP...T..CG.. | |
Retrocopy | RFKAFIAIREDYGRMGLGVKCSRERATAIRGAMILVKLST<PPMW*GYLENKINKAHIVPSMMTSCCGCA |
Parental | LVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLT-PDLWKETV |
..............SAP.PKKLLMMAGIDDC..SARG.TATL.NFAKATFDAI..TYS.LT.PDL.K.TV | |
Retrocopy | CAPHL*PQGHWHCASAPMPKKLLMMAGIDDC*NSARGHTATLCNFAKATFDAIPNTYSRLT<PDLRKQTV |
Parental | FTKSPYQEFTD |
FTKSP.QEFTD | |
Retrocopy | FTKSPSQEFTD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 405 .33 RPM |
SRP017611_brain | 0 .08 RPM | 141 .00 RPM |
SRP017611_kidney | 0 .40 RPM | 1239 .39 RPM |
SRP017611_liver | 0 .00 RPM | 306 .08 RPM |