RetrogeneDB ID: | retro_cfam_1983 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 9:36064993..36065618(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000017770 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000019472 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 93.3 % |
Parental protein coverage: | 70.99 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | LPIKESEIIDFFLGASLKD-EVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGA |
LPIKESEI.DFFL.ASLKD.EVLKI.PVQKQTRAGQ.TRFKAFVA.GDY.GHVGLG.KCSKEVATAIRGA | |
Retrocopy | LPIKESEIMDFFLEASLKD>EVLKILPVQKQTRAGQPTRFKAFVATGDYKGHVGLGIKCSKEVATAIRGA |
Parental | IILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYT |
IILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKL.MMAGID.CYT | |
Retrocopy | IILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLRMMAGIDNCYT |
Parental | SARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPAVATT |
SARGC..TLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVS.QRTQAPA.ATT | |
Retrocopy | SARGCITTLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSMQRTQAPAMATT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 405 .33 RPM |
SRP017611_brain | 0 .00 RPM | 141 .00 RPM |
SRP017611_kidney | 0 .07 RPM | 1239 .39 RPM |
SRP017611_liver | 0 .00 RPM | 306 .08 RPM |