RetrogeneDB ID: | retro_cfam_1848 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 7:27065283..27065843(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000019472 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.63 % |
Parental protein coverage: | 63.82 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | KIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKC |
KIKSLEE.YLFSL.I..SEI...FLGASLKD.VLKI.PVQK.T.A.Q.TRF.A.V.I.DY.GHVGLGVKC | |
Retrocopy | KIKSLEEMYLFSLSIRDSEITNSFLGASLKDKVLKIIPVQK*THAAQQTRF*ALVTIRDYSGHVGLGVKC |
Parental | SKEVATAIRGAIILAKLSIVPVRRGYW-GNKIGKPHTVPCKVTGRCGSVL-VRLIPAPRGTGIVS-APVP |
SK.V.TAI..AII.AKLSI.P...GYW.G.K..KPHTVP.KVT..CGS.L.V.LI..PRGTGIVS.APVP | |
Retrocopy | SKDVVTAIHEAIIPAKLSIIPM*QGYW<GDKMNKPHTVPSKVTCCCGSAL<VCLILVPRGTGIVS>APVP |
Parental | KKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETV |
KKLLMMAGID.CY.SARG..ATLGNFAKA.FD.I.K.YS....DLWKETV | |
Retrocopy | KKLLMMAGIDNCYISARGYPATLGNFAKAAFDVIFKIYSCFISDLWKETV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 405 .33 RPM |
SRP017611_brain | 0 .00 RPM | 141 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 1239 .39 RPM |
SRP017611_liver | 0 .00 RPM | 306 .08 RPM |