RetrogeneDB ID: | retro_ecab_1105 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | X:38172227..38172979(-) | ||
Located in intron of: | ENSECAG00000012700 | ||
Retrocopyinformation | Ensembl ID: | ENSECAG00000016634 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSECAG00000009065 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 92.91 % |
Parental protein coverage: | 85.67 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | GRGRGRGARGG-KAEDKEWIPVTKLGRLVKDMKIKSLEE-IYLFSLPIKESEIIDFFLGASLKDEVLKIM |
GRG.GR.ARG..KAEDKEWIPVTKLG.LVKDMKIKSLEE.IYLFSLPIKESEIID.FLGASLK.EVLKIM | |
Retrocopy | GRGHGRRARGA<KAEDKEWIPVTKLGHLVKDMKIKSLEE<IYLFSLPIKESEIIDSFLGASLKEEVLKIM |
Parental | PVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKP-HT |
PVQK.TRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRG.IILAKLSI.PVRRGYWGNKIGKP.HT | |
Retrocopy | PVQKHTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGGIILAKLSIIPVRRGYWGNKIGKP>HT |
Parental | VPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYS |
.P.KVTGRCGSVLV.LIPAPRG.GIVSAPVPKKLLMMAGID.CYTSARGCTATLGNFAKATFDAISKTYS | |
Retrocopy | APYKVTGRCGSVLVCLIPAPRGSGIVSAPVPKKLLMMAGIDNCYTSARGCTATLGNFAKATFDAISKTYS |
Parental | YLTPDLWKETVFTKSPYQEFTDHLVKNHTRVSVQRTQAPAVATT |
YLTPD.WKETVFTKSPYQEFTDHLVKNHTRVSVQRTQAPAVATT | |
Retrocopy | YLTPDPWKETVFTKSPYQEFTDHLVKNHTRVSVQRTQAPAVATT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .83 RPM | 1345 .23 RPM |
SRP021940_cerebellum | 0 .26 RPM | 357 .55 RPM |
SRP021940_embryo | 1 .20 RPM | 851 .49 RPM |
SRP021940_placental_villous | 0 .87 RPM | 688 .28 RPM |
SRP021940_synovial_membrane | 0 .99 RPM | 1087 .71 RPM |
SRP021940_testis | 0 .77 RPM | 354 .05 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000002549 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000019472 | 19 retrocopies |
retro_cfam_1028, retro_cfam_1252, retro_cfam_1321, retro_cfam_1460, retro_cfam_1560, retro_cfam_1592, retro_cfam_1842, retro_cfam_1848, retro_cfam_1932, retro_cfam_1983, retro_cfam_2007, retro_cfam_2012, retro_cfam_2046, retro_cfam_2053, retro_cfam_2110, retro_cfam_271, retro_cfam_323, retro_cfam_490, retro_cfam_629,
|
Cavia porcellus | ENSCPOG00000011651 | 11 retrocopies | |
Equus caballus | ENSECAG00000009065 | 7 retrocopies |
retro_ecab_1025, retro_ecab_1105 , retro_ecab_509, retro_ecab_632, retro_ecab_876, retro_ecab_892, retro_ecab_949,
|
Monodelphis domestica | ENSMODG00000016077 | 1 retrocopy | |
Mus musculus | ENSMUSG00000044533 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000016704 | 8 retrocopies | |
Rattus norvegicus | ENSRNOG00000014179 | 12 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000015213 | 5 retrocopies |