RetrogeneDB ID: | retro_ecab_876 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 6:30891698..30892223(+) | ||
Located in intron of: | ENSECAG00000005303 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSECAG00000009065 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 71.58 % |
Parental protein coverage: | 60.41 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 6 |
Parental | RAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTG |
RA.Q..R..AFVAIG.Y.G.V..GVKCSK.VATAI.GA..LAKLS.VPV..G.WGNKI.K.HT.PCK.TG | |
Retrocopy | RADQQNRIRAFVAIGEYKGRVSMGVKCSKAVATAICGAVLLAKLSLVPVQ*GCWGNKISKLHTIPCKATG |
Parental | RCGSVLVRLIPA-PRGTGIVSA-PVPKKLLMMAGIDDCYTSAR-GCTAT-LGNFAKATFDAISKTYSYLT |
.CGSV...L.PA.PRGTG.V.A.PVPKKLL....ID.CYTSAR.GCTAT.LG.FAKATFDAISKTY..LT | |
Retrocopy | *CGSVQAHLSPA<PRGTGVVAA<PVPKKLLLLTRIDTCYTSAR<GCTAT<LGSFAKATFDAISKTYGFLT |
Parental | PDLWKETVFTKS-PYQEFTDHLVKNH-TRVSVQRTQAPAVATT |
P..WKETVFTKS.P.QEFT.H.VK.H..RVSVQ.TQAPAVA.T | |
Retrocopy | PNPWKETVFTKS<PDQEFTGHFVKTH<PRVSVQKTQAPAVAST |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .12 RPM | 1345 .23 RPM |
SRP021940_cerebellum | 0 .31 RPM | 357 .55 RPM |
SRP021940_embryo | 0 .82 RPM | 851 .49 RPM |
SRP021940_placental_villous | 0 .24 RPM | 688 .28 RPM |
SRP021940_synovial_membrane | 0 .66 RPM | 1087 .71 RPM |
SRP021940_testis | 0 .00 RPM | 354 .05 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000002549 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000019472 | 19 retrocopies |
retro_cfam_1028, retro_cfam_1252, retro_cfam_1321, retro_cfam_1460, retro_cfam_1560, retro_cfam_1592, retro_cfam_1842, retro_cfam_1848, retro_cfam_1932, retro_cfam_1983, retro_cfam_2007, retro_cfam_2012, retro_cfam_2046, retro_cfam_2053, retro_cfam_2110, retro_cfam_271, retro_cfam_323, retro_cfam_490, retro_cfam_629,
|
Cavia porcellus | ENSCPOG00000011651 | 11 retrocopies | |
Equus caballus | ENSECAG00000009065 | 7 retrocopies |
retro_ecab_1025, retro_ecab_1105, retro_ecab_509, retro_ecab_632, retro_ecab_876 , retro_ecab_892, retro_ecab_949,
|
Monodelphis domestica | ENSMODG00000016077 | 1 retrocopy | |
Mus musculus | ENSMUSG00000044533 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000016704 | 8 retrocopies | |
Rattus norvegicus | ENSRNOG00000014179 | 12 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000015213 | 5 retrocopies |