RetrogeneDB ID: | retro_cfam_1560 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 35:471245..471878(+) | ||
Located in intron of: | ENSCAFG00000009134 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000019472 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.12 % |
Parental protein coverage: | 72.7 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | GRGRGRGARGGKAEDK-EWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASL-KDEVLKIM |
G.G.G..A..GK..D..EWI..TKLG.LV.DMK.KSLE.IYLFSLPIKESEI.D.FL..SL.KDE.LKIM | |
Retrocopy | GQGQGHRAPRGKTKDR<EWISITKLGHLVTDMKVKSLE-IYLFSLPIKESEITDYFLEISLLKDEDLKIM |
Parental | PVQKQTRAGQRTRFKAFVAIGDYN-GHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHT |
..QKQT.A.Q..RFKAF.AI.DY..GH..LG....KE.ATA..GAIILAKLSI.P...GYWGNK..K.HT | |
Retrocopy | SMQKQTCAHQQARFKAFAAIRDYM<GHISLGI*MLKEEATANHGAIILAKLSIIPMQQGYWGNKTSKLHT |
Parental | VPCKVTGRCGSVLVRLIPAPRGTGIVSAPVP-KKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTY |
VPCKVTG.CGS.LV.L.PAP......S.P.P.KKLLMMAGID.CYT.ARGCTATL.NF..ATFDAISKTY | |
Retrocopy | VPCKVTGHCGSLLVCLTPAPLHWYFLS-PCP<KKLLMMAGIDNCYTRARGCTATLDNFTMATFDAISKTY |
Parental | SYLTPDL |
SY.TPDL | |
Retrocopy | SYPTPDL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 405 .33 RPM |
SRP017611_brain | 0 .00 RPM | 141 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 1239 .39 RPM |
SRP017611_liver | 0 .00 RPM | 306 .08 RPM |