RetrogeneDB ID: | retro_cfam_2053 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | X:29660461..29661039(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000019472 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.19 % |
Parental protein coverage: | 66.55 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | AGGPGGPGGPGMGGRGGFRGGFGSG-IRGRGRGRGRGRGR-GRGARGGKAEDKEWIPVTKLGRLVKDMKI |
AG..G..GGP...G..G..G.F..G..R.R....G.G.GR.GR.ARGGKA...EWIPVT.LG.LVKDMKI | |
Retrocopy | AGAVGESGGPRGPGMVGHQG-FSGG<LRQRHTRPGPGCGR>GR-ARGGKAKHVEWIPVTMLGHLVKDMKI |
Parental | KSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSK |
KS.EEI.LF.LP.K.SEIIDFFL.ASLKDEVLK..PVQKQT.AGQ.TRFK.FVA.GDYNGH.GLGVKCSK | |
Retrocopy | KSPEEICLFPLPLKYSEIIDFFLEASLKDEVLKVIPVQKQTHAGQ*TRFKTFVAMGDYNGHIGLGVKCSK |
Parental | EVATAI-RGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGT |
EVATAI..GA.ILA.LSI.PV..G.W.NKI....T.PCKVTG.CGSVLV..IPAPR.T | |
Retrocopy | EVATAI<PGASILASLSIFPVPQGSWRNKISNLCTIPCKVTGPCGSVLVHFIPAPRST |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 405 .33 RPM |
SRP017611_brain | 0 .00 RPM | 141 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 1239 .39 RPM |
SRP017611_liver | 0 .00 RPM | 306 .08 RPM |