RetrogeneDB ID: | retro_cfam_2046 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | X:15218271..15218711(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000019472 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 90.54 % |
Parental protein coverage: | 50.17 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | VATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMM |
V.TAIRGAIILAKLSI.PVR.G.W.NKIGKPHTVPCKVTGRCGSVLV.LIPAPRGTGIVSAPVPKKLLMM | |
Retrocopy | VSTAIRGAIILAKLSIFPVR*GSWRNKIGKPHTVPCKVTGRCGSVLVHLIPAPRGTGIVSAPVPKKLLMM |
Parental | AGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQ |
AGIDDCYTSARGCTAT.GNFAKATFDAISKT.SYLT.D.WKETVFTK.PYQEFTDHLVKTHTRVSVQR.Q | |
Retrocopy | AGIDDCYTSARGCTATVGNFAKATFDAISKTCSYLTSDSWKETVFTKFPYQEFTDHLVKTHTRVSVQRIQ |
Parental | -APAVATT |
.APAV.TT | |
Retrocopy | <APAVVTT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 405 .33 RPM |
SRP017611_brain | 0 .00 RPM | 141 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 1239 .39 RPM |
SRP017611_liver | 0 .00 RPM | 306 .08 RPM |