Parental gene:

HSPE1, ENSECAG00000026874

Aliases:None
Description:heat shock 10kDa protein 1 (chaperonin 10) [Source:HGNC Symbol;Acc:5269]
Organism:Horse (Equus caballus)
Coordinates:18:72772543..72773999(+)


>ENSECAG00000026874
CAGGCAGGACAGGCATTTAGAAAGTTTCTTCCCCTCTTTGACCGAGTATTGGTTGAAAGGAGCGCGGCCGAAACTGTAAC
CAAAGGAGGCATTATGCTTCCAGAAAAATCTCAAGGGAAAGTATTGCAAGCAACAGTAGTAGCTGTTGGAGCAGGCTCTA
AAGGAAAGGGTGGAGAGATTCAACCAGTTAGCGTGAAGGTTGGAGATAAAGTTCTTCTCCCAGAATATGGAGGCACCAAA
GTAGTTCTAGATGACAAGGATTATTTCTTATTTAGAGATGGTGACATTCTTGGAAAGTATGTAGAC

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 17 .90 RPM
SRP021940_embryo 44 .50 RPM
SRP021940_cerebellum 32 .30 RPM
SRP021940_testis 28 .01 RPM
SRP021940_placental_villous 30 .31 RPM
SRP021940_articular_cartilage 11 .92 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013769 possible_ortholog 18 retrogenes
retro_amel_1027, retro_amel_1083, retro_amel_1084, retro_amel_1100, retro_amel_133, retro_amel_1504, retro_amel_1513, retro_amel_1623, retro_amel_1699, retro_amel_1819, retro_amel_199, retro_amel_23, retro_amel_269, retro_amel_310, retro_amel_329, retro_amel_491, retro_amel_506, retro_amel_922,
Bos taurus ENSBTAG00000012589 ortholog_one2one 4 retrogenes
retro_btau_1118, retro_btau_624, retro_btau_760, retro_btau_801,
Canis familiaris ENSCAFG00000010890 ortholog_one2one 4 retrogenes
retro_cfam_1768, retro_cfam_1883, retro_cfam_208, retro_cfam_556,
Dasypus novemcinctus ENSDNOG00000013246 ortholog_one2one 27 retrogenes
retro_dnov_1088, retro_dnov_1117, retro_dnov_1214, retro_dnov_1375, retro_dnov_1391, retro_dnov_1405, retro_dnov_1412, retro_dnov_1428, retro_dnov_1445, retro_dnov_1546, retro_dnov_1647, retro_dnov_1652, retro_dnov_1686, retro_dnov_1821, retro_dnov_2176, retro_dnov_2291, retro_dnov_2413, retro_dnov_2569, retro_dnov_2625, retro_dnov_2652, retro_dnov_418, retro_dnov_481, retro_dnov_483, retro_dnov_490, retro_dnov_524, retro_dnov_554, retro_dnov_966,
Felis catus ENSFCAG00000014455 ortholog_one2one 9 retrogenes
retro_fcat_114, retro_fcat_1174, retro_fcat_1406, retro_fcat_1686, retro_fcat_1723, retro_fcat_457, retro_fcat_681, retro_fcat_794, retro_fcat_97,
Loxodonta africana ENSLAFG00000000057 ortholog_one2one 1 retrogene
retro_lafr_69,
Myotis lucifugus ENSMLUG00000000878 ortholog_one2one 4 retrogenes
retro_mluc_1724, retro_mluc_1972, retro_mluc_1979, retro_mluc_2086,
Oryctolagus cuniculus ENSOCUG00000010360 ortholog_one2one 1 retrogene
retro_ocun_127,
Otolemur garnettii ENSOGAG00000034434 ortholog_one2many 24 retrogenes
retro_ogar_1018, retro_ogar_1441, retro_ogar_1512, retro_ogar_1690, retro_ogar_1744, retro_ogar_1899, retro_ogar_191, retro_ogar_1921, retro_ogar_200, retro_ogar_2030, retro_ogar_2129, retro_ogar_2310, retro_ogar_235, retro_ogar_2439, retro_ogar_2636, retro_ogar_2928, retro_ogar_3088, retro_ogar_3350, retro_ogar_3419, retro_ogar_389, retro_ogar_777, retro_ogar_824, retro_ogar_829, retro_ogar_834,
Rattus norvegicus ENSRNOG00000014868 possible_ortholog 6 retrogenes
retro_rnor_1094, retro_rnor_1320, retro_rnor_1334, retro_rnor_2245, retro_rnor_2296, retro_rnor_984,
Vicugna pacos ENSVPAG00000005805 ortholog_one2one 8 retrogenes
retro_vpac_173, retro_vpac_209, retro_vpac_292, retro_vpac_299, retro_vpac_329, retro_vpac_410, retro_vpac_443, retro_vpac_46,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_716 75.00 66.67
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Download FASTA sequences of all ENSECAG00000026874 retrocopies