RetrogeneDB ID: | retro_cfam_208 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 11:225369..225678(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000003956 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000010890 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 98.02 % |
Parental protein coverage: | 99.02 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | AGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKV |
AGQAFRKFLPLFD.VLVERSAAETVTKGGIMLPEKSQGKV.QATVVAVGSGSKGKGGEIQPVSVKVGDKV | |
Retrocopy | AGQAFRKFLPLFDWVLVERSAAETVTKGGIMLPEKSQGKVSQATVVAVGSGSKGKGGEIQPVSVKVGDKV |
Parental | LLPEYGGTKVVLDDKDYFLFRDGDILGKYVD |
LLPEYGGTKVVLDDKDYFLFRDGDILGKYVD | |
Retrocopy | LLPEYGGTKVVLDDKDYFLFRDGDILGKYVD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .21 RPM | 42 .71 RPM |
SRP017611_brain | 0 .71 RPM | 30 .25 RPM |
SRP017611_kidney | 0 .86 RPM | 161 .92 RPM |
SRP017611_liver | 0 .36 RPM | 41 .99 RPM |