RetrogeneDB ID: | retro_fcat_457 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A3:128737496..128737794(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000025898 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000014455 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.25 % |
Parental protein coverage: | 98.04 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | GQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGK-VLQATVVAVGSGSKGKGGEIQPVSVKVGDKV |
GQAFRKFL..FD..LVERS..ETVTKGG.MLPEKSQGK..LQAT..AVG.GSKGK.GEI.PV.V.VG... | |
Retrocopy | GQAFRKFLYFFDQILVERSVYETVTKGGMMLPEKSQGK>ILQATAEAVGWGSKGKCGEIHPVGVEVGHQG |
Parental | LLPEYGGTKVVLDDKDYFLFRDGDILGKYVD |
..PEYGGTK.VL.DKD.FLFRDGDILGKYV. | |
Retrocopy | FNPEYGGTKLVLEDKD-FLFRDGDILGKYVN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 25 .94 RPM |
SRP017611_kidney | 0 .00 RPM | 160 .87 RPM |
SRP017611_liver | 0 .00 RPM | 105 .54 RPM |