RetrogeneDB ID: | retro_fcat_114 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | F2:29615322..29615631(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000028974 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000014455 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 90. % |
Parental protein coverage: | 98.04 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKVL |
GQAFRKF..LFD..LVE.SAAETVTKGGIMLPEKSQGKVLQATVV.V..GSK.KGGEIQPVSVKVGDKVL | |
Retrocopy | GQAFRKFTSLFDQFLVEKSAAETVTKGGIMLPEKSQGKVLQATVVTVEPGSKRKGGEIQPVSVKVGDKVL |
Parental | LPEYGGTKVVLDDKDYFLFRDGDILGKYVD |
LPEYGGTKVVLDDKDYFL.RDGDILGKYVD | |
Retrocopy | LPEYGGTKVVLDDKDYFLLRDGDILGKYVD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 25 .94 RPM |
SRP017611_kidney | 0 .00 RPM | 160 .87 RPM |
SRP017611_liver | 0 .00 RPM | 105 .54 RPM |