RetrogeneDB ID: | retro_ocun_127 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 3:20129934..20130243(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000024173 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000010360 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 99.01 % |
Parental protein coverage: | 99.02 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | AGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKV |
AGQAFRKFLPLFDR.LVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKV | |
Retrocopy | AGQAFRKFLPLFDRILVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKV |
Parental | LLPEYGGTKVVLDDKDYFLFRDGDILGKYVD |
LLPEYGGTKVVLDDKDYFLFRDGDILGKYVD | |
Retrocopy | LLPEYGGTKVVLDDKDYFLFRDGDILGKYVD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .33 RPM | 12 .58 RPM |
SRP017611_kidney | 0 .20 RPM | 23 .11 RPM |
SRP017611_liver | 0 .00 RPM | 9 .25 RPM |