RetrogeneDB ID: | retro_cfam_556 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 13:50192769..50193024(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000010890 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.42 % |
Parental protein coverage: | 84.31 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | LVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKVLLPEYGGTKVVLDDK |
L..R...ETVTK.GIML..KSQ..VLQATVV.VGSGSKGKG.EIQP.SVKVGDKV.L.EY.GTKVVL.DK | |
Retrocopy | LFDRILVETVTKRGIMLS*KSQE*VLQATVVVVGSGSKGKGAEIQPISVKVGDKV-LAEYEGTKVVLEDK |
Parental | DYFLFRDGDILGKYVD |
.Y.LFR.GDIL..YVD | |
Retrocopy | YYSLFRHGDILRMYVD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .04 RPM | 42 .71 RPM |
SRP017611_brain | 0 .00 RPM | 30 .25 RPM |
SRP017611_kidney | 0 .00 RPM | 161 .92 RPM |
SRP017611_liver | 0 .00 RPM | 41 .99 RPM |