RetrogeneDB ID: | retro_fcat_681 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:7110376..7110676(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000014455 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.25 % |
Parental protein coverage: | 99.02 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | AGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKV |
AGQ.FRKFLPLFD.VLVERSAA....K.......K...K..Q...VAVGSGSKGKGGEI.PVSVKVG..V | |
Retrocopy | AGQTFRKFLPLFD*VLVERSAAKL*LKEALCF-QKIPKKLVQPDTVAVGSGSKGKGGEIHPVSVKVGIRV |
Parental | LLPEYGGTKVVLDDKDYFLFRDGDILGKYVD |
LLPEYGGTKVVLDDKDYFLFRDGDIL.KYVD | |
Retrocopy | LLPEYGGTKVVLDDKDYFLFRDGDILRKYVD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 25 .94 RPM |
SRP017611_kidney | 0 .00 RPM | 160 .87 RPM |
SRP017611_liver | 0 .00 RPM | 105 .54 RPM |