Parental gene:

ENSCAFG00000010890

Aliases:None
Description:None
Organism:Dog (Canis familiaris)
Coordinates:37:6984950..7026304(+)


>ENSCAFG00000010890
CAGGCAGGGCAGGCGTTTAGGAAGTTTCTTCCCCTCTTTGACCGGGTTTTAGTCGAAAGGAGTGCAGCTGAAACTGTAAC
CAAAGGAGGTATCATGCTACCAGAAAAATCTCAAGGGAAAGTGTTGCAAGCAACAGTAGTGGCTGTTGGATCGGGTTCCA
AAGGAAAGGGTGGAGAGATTCAACCAGTTAGTGTGAAAGTTGGAGATAAAGTTCTTCTCCCAGAATATGGAGGCACCAAA
GTAGTCCTAGATGACAAGGATTATTTCTTATTTAGAGATGGTGACATTCTCGGAAAGTATGTGGACTGA

Library Parental gene expression (RPM)
SRP017611_brain 30 .25 RPM
SRP017611_kidney 161 .92 RPM
SRP017611_liver 41 .99 RPM
SRP012049_cerebellum 42 .71 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013769 possible_ortholog 18 retrogenes
retro_amel_1027, retro_amel_1083, retro_amel_1084, retro_amel_1100, retro_amel_133, retro_amel_1504, retro_amel_1513, retro_amel_1623, retro_amel_1699, retro_amel_1819, retro_amel_199, retro_amel_23, retro_amel_269, retro_amel_310, retro_amel_329, retro_amel_491, retro_amel_506, retro_amel_922,
Bos taurus ENSBTAG00000012589 ortholog_one2one 4 retrogenes
retro_btau_1118, retro_btau_624, retro_btau_760, retro_btau_801,
Choloepus hoffmanni ENSCHOG00000007417 possible_ortholog 17 retrogenes
retro_chof_1048, retro_chof_1160, retro_chof_143, retro_chof_1476, retro_chof_1561, retro_chof_1755, retro_chof_1880, retro_chof_2052, retro_chof_2053, retro_chof_226, retro_chof_303, retro_chof_414, retro_chof_420, retro_chof_86, retro_chof_907, retro_chof_91, retro_chof_940,
Dasypus novemcinctus ENSDNOG00000013246 ortholog_one2many 27 retrogenes
retro_dnov_1088, retro_dnov_1117, retro_dnov_1214, retro_dnov_1375, retro_dnov_1391, retro_dnov_1405, retro_dnov_1412, retro_dnov_1428, retro_dnov_1445, retro_dnov_1546, retro_dnov_1647, retro_dnov_1652, retro_dnov_1686, retro_dnov_1821, retro_dnov_2176, retro_dnov_2291, retro_dnov_2413, retro_dnov_2569, retro_dnov_2625, retro_dnov_2652, retro_dnov_418, retro_dnov_481, retro_dnov_483, retro_dnov_490, retro_dnov_524, retro_dnov_554, retro_dnov_966,
Equus caballus ENSECAG00000026874 ortholog_one2one 1 retrogene
retro_ecab_716,
Erinaceus europaeus ENSEEUG00000005040 possible_ortholog 6 retrogenes
retro_eeur_132, retro_eeur_278, retro_eeur_474, retro_eeur_611, retro_eeur_657, retro_eeur_698,
Felis catus ENSFCAG00000014455 ortholog_one2one 9 retrogenes
retro_fcat_114, retro_fcat_1174, retro_fcat_1406, retro_fcat_1686, retro_fcat_1723, retro_fcat_457, retro_fcat_681, retro_fcat_794, retro_fcat_97,
Loxodonta africana ENSLAFG00000000057 ortholog_one2one 1 retrogene
retro_lafr_69,
Myotis lucifugus ENSMLUG00000000878 ortholog_one2one 4 retrogenes
retro_mluc_1724, retro_mluc_1972, retro_mluc_1979, retro_mluc_2086,
Mus musculus ENSMUSG00000073676 possible_ortholog 11 retrogenes
retro_mmus_1005, retro_mmus_1719, retro_mmus_1750, retro_mmus_1934, retro_mmus_2483, retro_mmus_2485, retro_mmus_301, retro_mmus_3077, retro_mmus_386, retro_mmus_872, retro_mmus_877,
Oryctolagus cuniculus ENSOCUG00000010360 ortholog_one2one 1 retrogene
retro_ocun_127,
Otolemur garnettii ENSOGAG00000034434 ortholog_one2many 24 retrogenes
retro_ogar_1018, retro_ogar_1441, retro_ogar_1512, retro_ogar_1690, retro_ogar_1744, retro_ogar_1899, retro_ogar_191, retro_ogar_1921, retro_ogar_200, retro_ogar_2030, retro_ogar_2129, retro_ogar_2310, retro_ogar_235, retro_ogar_2439, retro_ogar_2636, retro_ogar_2928, retro_ogar_3088, retro_ogar_3350, retro_ogar_3419, retro_ogar_389, retro_ogar_777, retro_ogar_824, retro_ogar_829, retro_ogar_834,
Rattus norvegicus ENSRNOG00000014868 possible_ortholog 6 retrogenes
retro_rnor_1094, retro_rnor_1320, retro_rnor_1334, retro_rnor_2245, retro_rnor_2296, retro_rnor_984,
Vicugna pacos ENSVPAG00000005805 ortholog_one2one 8 retrogenes
retro_vpac_173, retro_vpac_209, retro_vpac_292, retro_vpac_299, retro_vpac_329, retro_vpac_410, retro_vpac_443, retro_vpac_46,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_208 98.02 99.02
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2. retro_cfam_556 74.42 84.31
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3. retro_cfam_1768 63.64 94.12
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4. retro_cfam_1883 68.37 95.10
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Download FASTA sequences of all ENSCAFG00000010890 retrocopies