RetrogeneDB ID: | retro_ecab_716 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 3:56672232..56672433(+) | ||
Located in intron of: | ENSECAG00000017827 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HSPE1 | ||
Ensembl ID: | ENSECAG00000026874 | ||
Aliases: | None | ||
Description: | heat shock 10kDa protein 1 (chaperonin 10) [Source:HGNC Symbol;Acc:5269] |
Percent Identity: | 75. % |
Parental protein coverage: | 66.67 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EKSQGKVLQATVVAVGAGSKGKGGEIQPVSVKVGDKVLLPEYGGTKVVLDDKDYFLFRDGDILGKYVD |
.KSQ.KVLQ.TVVAV...S.GKGGEIQPVS..V.DK...PEYGG.KV.LDDKDYF.FR.GDILGKYVD | |
Retrocopy | KKSQEKVLQSTVVAVDLSSNGKGGEIQPVSMYVRDKIF-PEYGGIKVALDDKDYFFFRGGDILGKYVD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 11 .92 RPM |
SRP021940_cerebellum | 0 .00 RPM | 32 .30 RPM |
SRP021940_embryo | 0 .00 RPM | 44 .50 RPM |
SRP021940_placental_villous | 0 .00 RPM | 30 .31 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 17 .90 RPM |
SRP021940_testis | 0 .00 RPM | 28 .01 RPM |