RetrogeneDB ID: | retro_cfam_1768 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 5:63552260..63552543(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000010890 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 63.64 % |
Parental protein coverage: | 94.12 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | RKFLPLFDRVLVERS-AAETVTKGGI-MLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKVLLP |
R.FLP.F..VL.E.S.A...V..G.....P.KS.G.VLQAT.VAVGSGS.GKGGEIQP...KVGDK..LP | |
Retrocopy | RGFLPIFGQVLAEGSTASTVVHGGIV<VIPKKS*GNVLQATGVAVGSGSEGKGGEIQPRDIKVGDKCHLP |
Parental | EYGGTKV-VLDDKDYFLFRDGDILGKYVD |
EYGG.KV..LDD.D.F....GDILGKYVD | |
Retrocopy | EYGGIKV<ILDDTDHF*L--GDILGKYVD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 42 .71 RPM |
SRP017611_brain | 0 .00 RPM | 30 .25 RPM |
SRP017611_kidney | 0 .00 RPM | 161 .92 RPM |
SRP017611_liver | 0 .00 RPM | 41 .99 RPM |