Parental gene:

RPL15, ENSG00000174748

Aliases:RPL15, DBA12, EC45, L15, RPL10, RPLY10, RPYL10
Description:ribosomal protein L15 [Source:HGNC Symbol;Acc:10306]
Organism:Human (Homo sapiens)
Coordinates:3:23958035..23965183(+)


>ENSG00000174748
ATGGGTGCATACAAGTACATCCAGGAGCTATGGAGAAAGAAGCAGTCTGATGTCATGCGCTTTCTTCTGAGGGTCCGCTG
CTGGCAGTACCGCCAGCTCTCTGCTCTCCACAGGGCTCCCCGCCCCACCCGGCCTGATAAAGCGCGCCGACTGGGCTACA
AGGCCAAGCAAGGTTACGTTATATATAGGATTCGTGTTCGCCGTGGTGGCCGAAAACGCCCAGTTCCTAAGGGTGCAACT
TACGGCAAGCCTGTCCATCATGGTGTTAACCAGCTAAAGTTTGCTCGAAGCCTTCAGTCCGTTGCAGAGGAGCGAGCTGG
ACGCCACTGTGGGGCTCTGAGAGTCCTGAATTCTTACTGGGTTGGTGAAGATTCCACATACAAATTTTTTGAGGTTATCC
TCATTGATCCATTCCATAAAGCTATCAGAAGAAATCCTGACACCCAGTGGATCACCAAACCAGTCCACAAGCACAGGGAG
ATGCGTGGGCTGACATCTGCAGGCCGAAAGAGCCGTGGCCTTGGAAAGGGCCACAAGTTCCACCACACTATTGGTGGCTC
TCGCCGGGCAGCTTGGAGAAGGCGCAATACTCTCCAGCTCCACCGTTACCGCTAA

Library Parental gene expression (RPM)
bodymap2_adipose 613 .95 RPM
bodymap2_adrenal 761 .12 RPM
bodymap2_brain 581 .06 RPM
bodymap2_breast 564 .73 RPM
bodymap2_colon 864 .33 RPM
bodymap2_heart 276 .38 RPM
bodymap2_kidney 437 .95 RPM
bodymap2_liver 306 .40 RPM
bodymap2_lung 996 .54 RPM
bodymap2_lymph_node 926 .31 RPM
bodymap2_ovary 1298 .03 RPM
bodymap2_prostate 1288 .84 RPM
bodymap2_skeletal_muscle 589 .94 RPM
bodymap2_testis 602 .34 RPM
bodymap2_thyroid 616 .52 RPM
bodymap2_white_blood_cells 1141 .99 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000033080 ortholog_one2many 2 retrogenes
retro_btau_152, retro_btau_201,
Canis familiaris ENSCAFG00000005764 ortholog_one2one 5 retrogenes
retro_cfam_1003, retro_cfam_1159, retro_cfam_1630, retro_cfam_572, retro_cfam_656,
Cavia porcellus ENSCPOG00000002253 possible_ortholog 4 retrogenes
retro_cpor_620, retro_cpor_807, retro_cpor_900, retro_cpor_978,
Felis catus ENSFCAG00000026237 possible_ortholog 6 retrogenes
retro_fcat_1820, retro_fcat_285, retro_fcat_306, retro_fcat_610, retro_fcat_930, retro_fcat_985,
Gorilla gorilla ENSGGOG00000024274 possible_ortholog 13 retrogenes
retro_ggor_1327, retro_ggor_1611, retro_ggor_1716, retro_ggor_1989, retro_ggor_2029, retro_ggor_2125, retro_ggor_2314, retro_ggor_2473, retro_ggor_39, retro_ggor_524, retro_ggor_552, retro_ggor_654, retro_ggor_771,
Myotis lucifugus ENSMLUG00000013809 possible_ortholog 15 retrogenes
retro_mluc_1357, retro_mluc_1709, retro_mluc_1720, retro_mluc_2052, retro_mluc_2142, retro_mluc_2454, retro_mluc_425, retro_mluc_623, retro_mluc_701, retro_mluc_714, retro_mluc_748, retro_mluc_749, retro_mluc_907, retro_mluc_943, retro_mluc_99,
Macaca mulatta ENSMMUG00000006353 possible_ortholog 1 retrogene
retro_mmul_209,
Monodelphis domestica ENSMODG00000014880 ortholog_one2one 3 retrogenes
retro_mdom_1315, retro_mdom_1803, retro_mdom_918,
Mustela putorius furo ENSMPUG00000012148 ortholog_one2many 7 retrogenes
retro_mputfur_1011, retro_mputfur_1252, retro_mputfur_1291, retro_mputfur_314, retro_mputfur_346, retro_mputfur_658, retro_mputfur_669,
Mus musculus ENSMUSG00000012405 possible_ortholog 2 retrogenes
retro_mmus_118, retro_mmus_8,
Nomascus leucogenys ENSNLEG00000003580 ortholog_one2one 1 retrogene
retro_nleu_80,
Oryctolagus cuniculus ENSOCUG00000010961 possible_ortholog 2 retrogenes
retro_ocun_215, retro_ocun_228,
Otolemur garnettii ENSOGAG00000013056 ortholog_one2many 13 retrogenes
retro_ogar_1066, retro_ogar_1129, retro_ogar_1182, retro_ogar_1453, retro_ogar_1483, retro_ogar_1629, retro_ogar_1809, retro_ogar_2378, retro_ogar_270, retro_ogar_3058, retro_ogar_3096, retro_ogar_3349, retro_ogar_903,
Procavia capensis ENSPCAG00000011995 possible_ortholog 1 retrogene
retro_pcap_265,
Rattus norvegicus ENSRNOG00000008140 ortholog_one2many 17 retrogenes
retro_rnor_1046, retro_rnor_1409, retro_rnor_1497, retro_rnor_1685, retro_rnor_1690, retro_rnor_1785, retro_rnor_2042, retro_rnor_2249, retro_rnor_2313, retro_rnor_2451, retro_rnor_2473, retro_rnor_2786, retro_rnor_2997, retro_rnor_428, retro_rnor_66, retro_rnor_710, retro_rnor_844,
Sus scrofa ENSSSCG00000028079 ortholog_one2many 5 retrogenes
retro_sscr_1219, retro_sscr_1225, retro_sscr_448, retro_sscr_968, retro_sscr_997,
Tursiops truncatus ENSTTRG00000007244 ortholog_one2one 5 retrogenes
retro_ttru_1305, retro_ttru_1358, retro_ttru_280, retro_ttru_920, retro_ttru_987,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_592 82.05 57.35
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2. retro_hsap_631 84.06 98.53
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3. retro_hsap_791 84.24 99.51
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4. retro_hsap_930 80.30 99.51
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5. retro_hsap_957 85.78 100.00
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6. retro_hsap_1294 88.35 100.00
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7. retro_hsap_1804 73.94 80.88
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8. retro_hsap_2160 87.86 84.31
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9. retro_hsap_2870 81.95 99.51
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10. retro_hsap_2927 95.61 100.00
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11. retro_hsap_3095 83.24 90.69
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12. retro_hsap_3422 99.51 100.00
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13. retro_hsap_3661 81.29 75.00
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14. retro_hsap_3792 82.76 99.51
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Download FASTA sequences of all ENSG00000174748 retrocopies