RetrogeneDB ID: | retro_hsap_631 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 10:116660480..116661097(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000226428 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL15 | ||
Ensembl ID: | ENSG00000174748 | ||
Aliases: | RPL15, DBA12, EC45, L15, RPL10, RPLY10, RPYL10 | ||
Description: | ribosomal protein L15 [Source:HGNC Symbol;Acc:10306] |
Percent Identity: | 84.06 % |
Parental protein coverage: | 98.53 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | AYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSAL---HRAPR--PTRPDKARRLGYKAKQGYVIYRIRVR |
AYK.IQEL.RKKQ.DVM.FLLRV.CWQY.QLSA....HR..R....RP.KA..L.YKAKQGYVI.RIRVR | |
Retrocopy | AYKHIQELCRKKQCDVMHFLLRVHCWQYCQLSAVHRAHRPTRLHRSRPHKAG*LRYKAKQGYVICRIRVR |
Parental | RGGRKRPVP-KGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILID |
RGG.KRPVP.KGATY.KPVHHGVNQLKFAR.LQSVAEERAG.HCGALRVLNSYWVGEDSTYKF.EVILID | |
Retrocopy | RGGQKRPVP<KGATYSKPVHHGVNQLKFARNLQSVAEERAGCHCGALRVLNSYWVGEDSTYKFSEVILID |
Parental | PFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRY |
PFHKAI.RNPDTQWITKP.HKHREM.GLTSAG.KSRGLGKGHKFHHT.GGSRRAAWRR.NTLQLHRY | |
Retrocopy | PFHKAIGRNPDTQWITKPIHKHREMCGLTSAGQKSRGLGKGHKFHHTVGGSRRAAWRRHNTLQLHRY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 613 .95 RPM |
bodymap2_adrenal | 0 .00 RPM | 761 .12 RPM |
bodymap2_brain | 0 .00 RPM | 581 .06 RPM |
bodymap2_breast | 0 .00 RPM | 564 .73 RPM |
bodymap2_colon | 0 .00 RPM | 864 .33 RPM |
bodymap2_heart | 0 .00 RPM | 276 .38 RPM |
bodymap2_kidney | 0 .00 RPM | 437 .95 RPM |
bodymap2_liver | 0 .00 RPM | 306 .40 RPM |
bodymap2_lung | 0 .00 RPM | 996 .54 RPM |
bodymap2_lymph_node | 0 .00 RPM | 926 .31 RPM |
bodymap2_ovary | 0 .02 RPM | 1298 .03 RPM |
bodymap2_prostate | 0 .02 RPM | 1288 .84 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 589 .94 RPM |
bodymap2_testis | 0 .00 RPM | 602 .34 RPM |
bodymap2_thyroid | 0 .00 RPM | 616 .52 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 1141 .99 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_459 |
Gorilla gorilla | retro_ggor_552 |
Pongo abelii | retro_pabe_561 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000033080 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000005764 | 5 retrocopies | |
Cavia porcellus | ENSCPOG00000002253 | 4 retrocopies | |
Felis catus | ENSFCAG00000026237 | 6 retrocopies | |
Homo sapiens | ENSG00000174748 | 14 retrocopies | |
Gorilla gorilla | ENSGGOG00000024274 | 13 retrocopies | |
Myotis lucifugus | ENSMLUG00000013809 | 15 retrocopies | |
Macaca mulatta | ENSMMUG00000006353 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000014880 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000012148 | 7 retrocopies | |
Mus musculus | ENSMUSG00000012405 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000003580 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000010961 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000013056 | 13 retrocopies | |
Procavia capensis | ENSPCAG00000011995 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000008140 | 17 retrocopies | |
Sus scrofa | ENSSSCG00000028079 | 5 retrocopies | |
Tursiops truncatus | ENSTTRG00000007244 | 5 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .03 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .03 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |