Parental gene: | NANOG, ENSPTRG00000029807 |
| Aliases: | None |
| Description: | Pan troglodytes Nanog homeobox (NANOG), mRNA. [Source:RefSeq mRNA;Acc:NM_001071827] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 12:8021058..8027419(+) |
>ENSPTRG00000029807
ATGAGTGTGGATCCAGCTTGTCCCCAAAGCTTGCCTTGCTTCGAAGCATCCGACTGTAAAGAATCTTCACCTATGCCTGT
GATTTGTGGGCCTGAAGAAAACTATCCATCCTTGCAAATGTCTTCTGCTGAGATGCCTCACACGGAGACTGTCTCTCCTC
TTCCTTCCTCCATGGATCTGCTTATTCAGGACAGCCCTGATTCTTCCACCAGTCCCAAAGGCAAACAACCCACTTCCGCA
GAGAATAGTGTCACAAAAAAGGAAGACAAGGTCCCGGTCAAGAAACAGAAGACCAGAACTGTGTTCTCTTCCACCCAGCT
GTGTGTACTCAATGATAGATTTCAGAGACAGAAATACCTCAGCCTCCAGCAGATGCAAGAACTCTCCAACATCCTGAACC
TCAGCTACAAACAGGTGAAGACCTGGTTCCAGAACCAGAGAATGAAATCTAAGAGGTGGCAGAAAAACAACTGGCCGAAG
AATAGCAATGGTGTGACGCAGAAGGCCTCAGCACCTACCTACCCCAGCCTCTACTCTTCCTACCACCAGGGATGCCTGGT
GAACCCGACTGGGAACCTTCCAATGTGGAGCAACCAGACCTGGAACAATTCAACCTGGAGCAACCAGACCCAGAACATCC
AGTCCTGGAGCAACCACTCCTGGAACACTCAGACCTGGTGCACCCAATCCTGGAACAATCAGGCCTGGAACAGTCCCTTC
TATAACTGTGGAGAGGAATCTCTGCAGTCCTGCATGCAGTTCCAGCCAAATTCTCCTGCCAGTGACTTGGAGGCTGCCTT
GGAAGCTGCTGGGGAAGGCCTTAATGTAATACAGCAGACCGCTAGGTATTTTAGTACTCCACAAACCATGGATTTATTCC
TAAACTACTCCACGAACATGCAACCTGAAGACATGTGA
ATGAGTGTGGATCCAGCTTGTCCCCAAAGCTTGCCTTGCTTCGAAGCATCCGACTGTAAAGAATCTTCACCTATGCCTGT
GATTTGTGGGCCTGAAGAAAACTATCCATCCTTGCAAATGTCTTCTGCTGAGATGCCTCACACGGAGACTGTCTCTCCTC
TTCCTTCCTCCATGGATCTGCTTATTCAGGACAGCCCTGATTCTTCCACCAGTCCCAAAGGCAAACAACCCACTTCCGCA
GAGAATAGTGTCACAAAAAAGGAAGACAAGGTCCCGGTCAAGAAACAGAAGACCAGAACTGTGTTCTCTTCCACCCAGCT
GTGTGTACTCAATGATAGATTTCAGAGACAGAAATACCTCAGCCTCCAGCAGATGCAAGAACTCTCCAACATCCTGAACC
TCAGCTACAAACAGGTGAAGACCTGGTTCCAGAACCAGAGAATGAAATCTAAGAGGTGGCAGAAAAACAACTGGCCGAAG
AATAGCAATGGTGTGACGCAGAAGGCCTCAGCACCTACCTACCCCAGCCTCTACTCTTCCTACCACCAGGGATGCCTGGT
GAACCCGACTGGGAACCTTCCAATGTGGAGCAACCAGACCTGGAACAATTCAACCTGGAGCAACCAGACCCAGAACATCC
AGTCCTGGAGCAACCACTCCTGGAACACTCAGACCTGGTGCACCCAATCCTGGAACAATCAGGCCTGGAACAGTCCCTTC
TATAACTGTGGAGAGGAATCTCTGCAGTCCTGCATGCAGTTCCAGCCAAATTCTCCTGCCAGTGACTTGGAGGCTGCCTT
GGAAGCTGCTGGGGAAGGCCTTAATGTAATACAGCAGACCGCTAGGTATTTTAGTACTCCACAAACCATGGATTTATTCC
TAAACTACTCCACGAACATGCAACCTGAAGACATGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 0 .04 RPM |
| SRP007412_cerebellum | 0 .04 RPM |
| SRP007412_heart | 0 .00 RPM |
| SRP007412_kidney | 0 .00 RPM |
| SRP007412_liver | 0 .00 RPM |
| SRP007412_testis | 0 .74 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000017064 | ortholog_one2many | 1 retrogene | |
| Canis familiaris | ENSCAFG00000013914 | ortholog_one2many | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000000972 | ortholog_one2one | 4 retrogenes | |
| Cavia porcellus | ENSCPOG00000002621 | ortholog_one2many | 1 retrogene | |
| Echinops telfairi | ENSETEG00000004648 | ortholog_one2many | 8 retrogenes | |
| Felis catus | ENSFCAG00000001621 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000111704 | ortholog_one2one | 5 retrogenes | |
| Gorilla gorilla | ENSGGOG00000028196 | ortholog_one2one | 4 retrogenes | |
| Macropus eugenii | ENSMEUG00000009949 | ortholog_one2one | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000002228 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000029325 | ortholog_one2many | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000030580 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000032158 | ortholog_one2many | 4 retrogenes | |
| Monodelphis domestica | ENSMODG00000017979 | ortholog_one2one | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000016731 | ortholog_one2one | 5 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000005359 | ortholog_one2many | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000013783 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000026339 | ortholog_one2one | 1 retrogene | |
| Procavia capensis | ENSPCAG00000015460 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000004233 | ortholog_one2many | 5 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000006989 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_990 | 88.95 | 62.30 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_1746 | 91.88 | 63.93 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_2514 | 90.31 | 63.93 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ptro_3203 | 88.21 | 63.93 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000029807 retrocopies