RetrogeneDB ID: | retro_ggor_3000 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | X:44099923..44100508(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000111704 | ||
Ensembl ID: | ENSGGOG00000028196 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.72 % |
Parental protein coverage: | 63.93 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MSVDPACPQSLPCFEASDCKESSPMPVICGPEENYPSLQMSSAEIPHTETVSPLPSSMDLPIQDSPDSST |
M.V.PA..Q.LPC.EAS.CK.SSP.PV.CGPEENYPSLQMSSAE.PHTETVSPLPSSMDL.IQDSPDSST | |
Retrocopy | MIVNPAYAQNLPCSEASNCKLSSPTPVTCGPEENYPSLQMSSAEMPHTETVSPLPSSMDLLIQDSPDSST |
Parental | SPKGKQPTSAEKSATKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVK |
SPKGK.PTSAEKS.TKKEDKV.V.KQKTRTVF.STQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVK | |
Retrocopy | SPKGKKPTSAEKSTTKKEDKVLVRKQKTRTVFCSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVK |
Parental | TWFQNQRMKSKRWQKNNWPKNSNGVTQKASAPTYPSLYSSYHQGCLVNPTGNLPM |
TWFQNQRMKSKR.QKNNWPKNS.GVTQKASAPTYPSL.SSYH.GCLVN.TGNLPM | |
Retrocopy | TWFQNQRMKSKR*QKNNWPKNSSGVTQKASAPTYPSLRSSYHKGCLVNMTGNLPM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .48 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .08 RPM |
SRP007412_heart | 0 .00 RPM | 0 .09 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .45 RPM |
SRP007412_liver | 0 .00 RPM | 0 .13 RPM |
SRP007412_testis | 0 .00 RPM | 0 .41 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4814 |
Pan troglodytes | retro_ptro_3203 |
Pongo abelii | retro_pabe_3742 |