RetrogeneDB ID: | retro_pabe_3742 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | X:44024938..44025523(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSPPYG00000004233 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.21 % |
Parental protein coverage: | 63.93 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MSVDPACPQSLPCFEASDCKESSPMPMICGPEENHPSLQMSSAEMPHTETVSPLPSSMDLLIQDSPDSST |
M.V.PA.PQSLPC.EAS.CKESSP....CGPEEN.PSLQMSSAEMPHTETVSPLPSSMDLLIQDSPDSST | |
Retrocopy | MIVNPAYPQSLPCSEASNCKESSPTLVTCGPEENYPSLQMSSAEMPHTETVSPLPSSMDLLIQDSPDSST |
Parental | SPKGKQPTAAENSATKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVK |
SPKGK.PT.AE.S.T.KEDKV.VKKQKTRTVF.STQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVK | |
Retrocopy | SPKGKKPTSAEKSTTEKEDKVLVKKQKTRTVFCSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVK |
Parental | TWFQNQRMKSKRWQKNNWPKNSNGVTQKASAPTYPSLYSSYHQGCLVNPTGNLPM |
TWFQNQRMKSKR.QKNNWPKNS.GVT.KASAPTYPSL.SSYH.GCLVN.TGNLPM | |
Retrocopy | TWFQNQRMKSKR*QKNNWPKNSSGVTRKASAPTYPSLHSSYHKGCLVNTTGNLPM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4814 |
Pan troglodytes | retro_ptro_3203 |
Gorilla gorilla | retro_ggor_3000 |